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/home/cluster1/data/bu01/1121861/jlex/rdloci/vregions/vregions.xml

<?xml version="1.0" encoding="iso-8859-1"?>
<vregions>

<vregion>
<strain>J170</strain>
<locus>Locus2</locus>
<allele>Green</allele>
<AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEQQKT EQEKQKT NNTQ KDLIKKA</AA_sequence>
</vregion>

<vregion>
<strain>J170</strain>
<locus>Locus1</locus>
<allele>Red</allele>
<AA_sequence>* * * EQEKQKT EQEQQKT EQERQKA NKSGIEL EQERRKT NKSEIEL ANSQIKV * EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence>
</vregion>

<vregion>
<strain>J178</strain>
<locus>locus1</locus>
<allele>Red</allele>
<AA_sequence>* * EQEKQKA NKSGIEL EQERQKT EQERQKT NKSEIEL EQERRKT NKSEIEL ANSQIKV * EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence>
</vregion>

<vregion>
<strain>J178</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * EQEHQKT EQERQKT EQERQKT EQEKQKT INTQ KDFIKYV</AA_sequence>
</vregion>

<vregion>
<strain>J230</strain>
<locus>locus1</locus>
<allele>Red</allele>
<AA_sequence>* * EQEKQKT EQEQQKT EQERQKA NKSGIEL EQERQKT EQERRKT NKSEIEL ANSQIKV * EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence>
</vregion>

<vregion>
<strain>J230</strain>
<locus>locus2</locus>
<allele>Green</allele>
<AA_sequence>* * * * * * EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEQQKT EQEKQKT NNTQ KDLIKKA</AA_sequence>
</vregion>

<vregion>
<strain>J254</strain><locus>locus2</locus>
<allele>Green</allele>
<AA_sequence>* * * EQEQQKT EQEQQKT EQEQQKT EQEKQKT EQEKQKT EQEKQKT EQEKQKT EQEKQKT SNIETNNQIKV EQEQQKT EQEKQKT NNTQ KDLINKA</AA_sequence>
</vregion>

<vregion>
<strain>J254</strain>
<locus>locus1</locus>
<allele>Red</allele>
<AA_sequence>* * * * EQEKKEA NKSGIEL EQERQKT EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT NNTQ KDLINKA</AA_sequence>
</vregion>

<vregion>
<strain>J254</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * * EQEKQKT INTQ KDFIKET</AA_sequence>
</vregion>

<vregion>
<strain>J258</strain>
<locus>locus1</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNVETNNQIKV EQEQQKT * SNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>J258</strain>
<locus>locus2</locus>
<allele>Green</allele>
<AA_sequence>* * * * * * EQEKQKT EQEQQKT EQEQQKT EQEKQKT EQEKQKT SNIETNNKIRV EQEQQKT EQEKQKT INTQ KDFIKYV</AA_sequence>
</vregion>

<vregion>
<strain>J282</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * EQEQQKT EQEKQKT INTQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>J282</strain>
<locus>locus1</locus>
<allele>Red</allele>
<AA_sequence>* * * EQEKQKT EQEQQKT EQERQKA NKSGIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence>
</vregion>

<vregion>
<strain>J166</strain>
<locus>locus1</locus>
<allele>Green</allele>
<AA_sequence>* * * * * * * * EQEQQKT SNIETNNQIKV EQEKQKT NNIETNNQIKV EQEQQKT * NNTQ KDLIKKA</AA_sequence>
</vregion>

<vregion>
<strain>J166</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>J166</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-147</strain>
<locus>locus1</locus>
<allele>Green</allele>
<AA_sequence>* * EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT * NNTQ KDLVNKA</AA_sequence>
</vregion>

<vregion>
<strain>98-147</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDSLNT?</AA_sequence>
</vregion>

<vregion>
<strain>98-147</strain>
<locus>locus1</locus>
<allele>Red</allele>
<AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence>
</vregion>

<vregion>
<strain>98-149</strain>
<allele>Green</allele>
<locus>locus1</locus>
<AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEQQKT EQEKQKT NNTQ KDLVNKA</AA_sequence>
</vregion>

<vregion>
<strain>98-149</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-149</strain>
<locus>locus1</locus>
<allele>Red</allele>
<AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-150</strain>
<locus>locus1</locus>
<allele>Green</allele>
<AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEQQKT EQEKQKT NNTQ KDLVNKA</AA_sequence>
</vregion>

<vregion>
<strain>98-150</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * EQEQQKT EQEKQKT INTQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-150</strain>
<locus>locus1</locus>
<allele>red</allele>
<AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-151</strain>
<locus>locus1</locus>
<allele>Green</allele>
<AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEQQKT DHEKPKT NITL KDLVNKA</AA_sequence>
</vregion>

<vregion>
<strain>98-151</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-151</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQE?QKA NKSEIEL EQQKQKT INTQ RDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-152</strain>
<locus>locus1</locus>
<allele>Green</allele>
<AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEQQKT EQEKQKT NNTQ KDLVNKA</AA_sequence>
</vregion>

<vregion>
<strain>98-152</strain>
<locus>locus1</locus>
<allele>Red</allele>
<AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-152</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-169</strain>
<locus>locus1</locus>
<allele>Green</allele>
<AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT NNTQ KDLVNKA</AA_sequence>
</vregion>

<vregion>
<strain>98-169</strain>
<locus>locus1</locus>
<allele>Red</allele>
<AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence>
</vregion>

<vregion>
<strain>98-169</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-170</strain>
<locus>locus1</locus>
<allele>Green</allele>
<AA_sequence>* * EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV ELEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT * NNTQ KDLVNKA</AA_sequence>
</vregion>

<vregion>
<strain>98-170</strain>
<locus>locus1</locus>
<allele>Red</allele>
<AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFLKET</AA_sequence>
</vregion>

<vregion>
<strain>98-170</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-171</strain>
<locus>locus1</locus>
<allele>Green</allele>
<AA_sequence> * * EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT * NNTQ KDLVNKA</AA_sequence>
</vregion>

<vregion>
<strain>98-171</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-180</strain>
<locus>locus1</locus>
<allele>Green</allele>
<AA_sequence>* * EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT * NNTQ KDLVNKA</AA_sequence>
</vregion>

<vregion>
<strain>98-180</strain>
<locus>locus1</locus>
<allele>Red</allele>
<AA_sequence>EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence>
</vregion>

<vregion>
<strain>98-180</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-182</strain>
<locus>locus1</locus>
<allele>Green</allele>
<AA_sequence>* * EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT * NNTQ KDLVNKA</AA_sequence>
</vregion>

<vregion>
<strain>98-182</strain>
<locus>locus1</locus>
<allele>Red</allele>
<AA_sequence>EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence>
</vregion>

<vregion>
<strain>98-182</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-208</strain>
<locus>locus1</locus>
<allele>Green</allele>
<AA_sequence>* * EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNMETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT * NNTQ KDLVNKA</AA_sequence>
</vregion>

<vregion>
<strain>98-208</strain>
<locus>locus1</locus>
<allele>Red</allele>
<AA_sequence>EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence>
</vregion>

<vregion>
<strain>98-208</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-210</strain>
<locus>locus1</locus>
<allele>Green</allele>
<AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKLKS NNTQ KDLVNKA</AA_sequence>
</vregion>

<vregion>
<strain>98-210</strain>
<locus>locus1</locus>
<allele>Red</allele>
<AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence>
</vregion>

<vregion>
<strain>98-210</strain>
<locus>locus2</locus>
<allele>Red</allele> 
<AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-212</strain>
<locus>locus1</locus>
<allele>Green</allele>
<AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT NNTQ KDLVNKA</AA_sequence>
</vregion>

<vregion>
<strain>98-212</strain>
<locus>locus2</locus>
<allele>Red</allele>
<AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence>
</vregion>

<vregion>
<strain>98-212</strain>
<locus>locus1</locus>
<allele>Red</allele>-Fixed
<AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence>
</vregion>

</vregions>