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      <TITLE>H. pylori Database</TITLE>
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         <H1>RD Gene Database</H1>
         <FORM METHOD="post" action="../../php5/query_result.php5"><INPUT TYPE="hidden" NAME="project" value="rdloci"><BR><BR><TABLE BORDER="1" WIDTH="600">
               <TR>
                  <TH>Field</TH>
                  <TH>Logical operator</TH>
                  <TH>String</TH>
               </TR>
               <tr>
                  <td><select name="phrases_and_fields_0">
                        <option value="Strain">Strain</option>
                        <option value="Strain Type">Strain Type</option>
                        <option value="Geographic Origin">Geographic Origin</option>
                        <option value="Locus">Locus</option>
                        <option value="Allele">Allele</option>
                        <option value="AA Variable Region">AA Variable Region</option>
                        <option value="DNA Variable Region">DNA Variable Region</option>
                        <option value="Variable Region Type">Variable Region Type</option>
                        <option value="Allele Sequence">Allele Sequence</option>
                        <option value="Conserved Sequence">Conserved Sequence</option></select></td>
                  <td><select name="reg_exps_0">
                        <option value="contains sequence">contains sequence</option>
                        <option value="does not contain sequence">does not contain sequence</option>
                        <option value="begins with">begins with</option>
                        <option value="does not begin with">does not begin with</option>
                        <option value="ends with">ends with</option>
                        <option value="does not end with">does not end with</option>
                        <option value="equals">equals</option>
                        <option value="does not equal">does not equal</option>
                        <option value="empty">empty</option>
                        <option value="not empty">not empty</option>
                        <option value="contains word">contains word</option>
                        <option value="does not contain word">does not contain word</option>
                        <option value="regular expression">regular expression</option></select></td>
                  <td><input type="text" size="20" name="string_0"></td>
               </tr>
               <tr>
                  <td colspan="4" align="center"><select name="connectives_0">
                        <option value="AND">AND</option>
                        <option value="OR">OR</option></select></td>
               </tr>
               <tr>
                  <td><select name="phrases_and_fields_1">
                        <option value="Strain">Strain</option>
                        <option value="Strain Type">Strain Type</option>
                        <option value="Geographic Origin">Geographic Origin</option>
                        <option value="Locus">Locus</option>
                        <option value="Allele">Allele</option>
                        <option value="AA Variable Region">AA Variable Region</option>
                        <option value="DNA Variable Region">DNA Variable Region</option>
                        <option value="Variable Region Type">Variable Region Type</option>
                        <option value="Allele Sequence">Allele Sequence</option>
                        <option value="Conserved Sequence">Conserved Sequence</option></select></td>
                  <td><select name="reg_exps_1">
                        <option value="contains sequence">contains sequence</option>
                        <option value="does not contain sequence">does not contain sequence</option>
                        <option value="begins with">begins with</option>
                        <option value="does not begin with">does not begin with</option>
                        <option value="ends with">ends with</option>
                        <option value="does not end with">does not end with</option>
                        <option value="equals">equals</option>
                        <option value="does not equal">does not equal</option>
                        <option value="empty">empty</option>
                        <option value="not empty">not empty</option>
                        <option value="contains word">contains word</option>
                        <option value="does not contain word">does not contain word</option>
                        <option value="regular expression">regular expression</option></select></td>
                  <td><input type="text" size="20" name="string_1"></td>
               </tr>
               <tr>
                  <td colspan="4" align="center"><select name="connectives_1">
                        <option value="AND">AND</option>
                        <option value="OR">OR</option></select></td>
               </tr>
               <tr>
                  <td><select name="phrases_and_fields_2">
                        <option value="Strain">Strain</option>
                        <option value="Strain Type">Strain Type</option>
                        <option value="Geographic Origin">Geographic Origin</option>
                        <option value="Locus">Locus</option>
                        <option value="Allele">Allele</option>
                        <option value="AA Variable Region">AA Variable Region</option>
                        <option value="DNA Variable Region">DNA Variable Region</option>
                        <option value="Variable Region Type">Variable Region Type</option>
                        <option value="Allele Sequence">Allele Sequence</option>
                        <option value="Conserved Sequence">Conserved Sequence</option></select></td>
                  <td><select name="reg_exps_2">
                        <option value="contains sequence">contains sequence</option>
                        <option value="does not contain sequence">does not contain sequence</option>
                        <option value="begins with">begins with</option>
                        <option value="does not begin with">does not begin with</option>
                        <option value="ends with">ends with</option>
                        <option value="does not end with">does not end with</option>
                        <option value="equals">equals</option>
                        <option value="does not equal">does not equal</option>
                        <option value="empty">empty</option>
                        <option value="not empty">not empty</option>
                        <option value="contains word">contains word</option>
                        <option value="does not contain word">does not contain word</option>
                        <option value="regular expression">regular expression</option></select></td>
                  <td><input type="text" size="20" name="string_2"></td>
               </tr>
               <tr>
                  <td colspan="4" align="center"><select name="connectives_2">
                        <option value="AND">AND</option>
                        <option value="OR">OR</option></select></td>
               </tr>
               <tr>
                  <td><select name="phrases_and_fields_3">
                        <option value="Strain">Strain</option>
                        <option value="Strain Type">Strain Type</option>
                        <option value="Geographic Origin">Geographic Origin</option>
                        <option value="Locus">Locus</option>
                        <option value="Allele">Allele</option>
                        <option value="AA Variable Region">AA Variable Region</option>
                        <option value="DNA Variable Region">DNA Variable Region</option>
                        <option value="Variable Region Type">Variable Region Type</option>
                        <option value="Allele Sequence">Allele Sequence</option>
                        <option value="Conserved Sequence">Conserved Sequence</option></select></td>
                  <td><select name="reg_exps_3">
                        <option value="contains sequence">contains sequence</option>
                        <option value="does not contain sequence">does not contain sequence</option>
                        <option value="begins with">begins with</option>
                        <option value="does not begin with">does not begin with</option>
                        <option value="ends with">ends with</option>
                        <option value="does not end with">does not end with</option>
                        <option value="equals">equals</option>
                        <option value="does not equal">does not equal</option>
                        <option value="empty">empty</option>
                        <option value="not empty">not empty</option>
                        <option value="contains word">contains word</option>
                        <option value="does not contain word">does not contain word</option>
                        <option value="regular expression">regular expression</option></select></td>
                  <td><input type="text" size="20" name="string_3"></td>
               </tr>
               <TR>
                  <TD COLSPAN="4" ALIGN="CENTER"><b>Stylesheet: </b><SELECT name="stylesheet">
                        <OPTION value="../rdloci/allele_to_html.xsl">Align Alleles</OPTION>
                        <OPTION value="../rdloci/conserved_to_html.xsl">Align Conserved Region</OPTION>
                        <OPTION value="../rdloci/allele_and_cons.xsl">Align Allele + Conserved Region</OPTION>
                        <OPTION value="../rdloci/aa_to_html.xsl">Analyze Variable Region (AA)</OPTION>
                        <OPTION value="../rdloci/dna_to_html.xsl">Analyze Variable Region (DNA)</OPTION>
                        <OPTION value="../rdloci/aa_words.xsl">Align VRegion AA Words</OPTION>
                        <OPTION value="../rdloci/dna_words.xsl">Align VRegionDNA Words</OPTION>
                        <OPTION value="../rdloci/vregion_align.xsl">Align Vregions</OPTION>
                        <OPTION value="../rdloci/align-allele_vregion_cons.xsl">Align RD Gene (Allele, Variable, and Cons)</OPTION>
                        <OPTION value="">None</OPTION></SELECT></TD>
               </TR>
               <TR>
                  <TD COLSPAN="4" ALIGN="CENTER"><b>Sort on: </b><INPUT TYPE="text" name="sort_order" size="25"></TD>
               </TR>
               <TR>
                  <TD COLSPAN="4" ALIGN="center"><INPUT TYPE="submit" VALUE="Submit"><INPUT TYPE="reset" VALUE="Reset"></TD>
               </TR>
            </TABLE>
         </FORM><BR><BR></CENTER>
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