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/home/cluster1/data/bu01/1121861/jlex/rdloci/allele_to_html.xsl

<xsl:stylesheet
xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
version="1.0"
>

<xsl:template match="rdlocus">
<xsl:variable name="name"><xsl:value-of select="concat('sequence_',position())"/></xsl:variable>
<xsl:variable name="rc"><xsl:value-of select="concat('rc_',position())"/></xsl:variable>
<xsl:variable name="translate"><xsl:value-of select="concat('translate_',position())"/></xsl:variable>
<tr>
<td>
<INPUT TYPE="checkbox" value="on">
<xsl:attribute name="name"><xsl:value-of select="$rc"/></xsl:attribute>
</INPUT>
</td>
<td>
<TEXTAREA ROWS='2' COLS="110"><xsl:attribute name="name">
<xsl:value-of select="$name"/></xsl:attribute>&gt;<xsl:value-of select="strain"/>-L<xsl:value-of select="locus"/>-<xsl:value-of select="org"/>-<xsl:value-of select="allele"/>-<xsl:value-of select="vregion"/><xsl:text>
</xsl:text>
<xsl:value-of select="allele_sequence"/>
</TEXTAREA>
</td>

</tr>

</xsl:template>

<xsl:template match="resultset">
<form action="../alignment/align.php" method="post">
<input type="hidden" name="num_results">
<xsl:attribute name="value"><xsl:value-of select="@num_results"/></xsl:attribute>
</input>
Output Filename: <input type="text" size="30" name="file_name"/><br/>
Font Size: <input type="text" size="10" name="font_size" value="8px"/>

<table border="1" width="100%">
<tr><th>RC</th><th>Sequence</th></tr>
<xsl:apply-templates select="rdlocus"/>

<tr>
<td colspan="2" align="center">
<b>Translate Sequences: </b><input type="checkbox" name="translate" value="on"/> 
<b>Frame:</b>
<select name="frame">
<option>1</option>
<option>2</option>
<option>3</option>
</select>
</td></tr>
<tr><td colspan='2' align="center"><input type="submit"/></td></tr>

</table>
</form>
</xsl:template>

<xsl:template match="/">
<HTML>
<HEAD>
<TITLE>H. pylori RD Gene Database Search Results</TITLE>
<META HTTP-EQUIV='Content-Type' CONTENT='text/html; charset=iso-8859-1'></META>
</HEAD>

</BODY>
</HTML>

</xsl:template>

</xsl:stylesheet>