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/home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/pre-locus1-igrs.aln
CLUSTAL W (1.83) multiple sequence alignment 98-171_Pre-RD_non-RD_RD-Green_ ------------CCCCATTGTAG---TTTACCTTATTTTAGGGATAGTTT 98-182_Pre-RD_non-RD_RD-Green_ -----GGGGTTACCCCATTGTAG---TTTACCTTATTTTAGGGATAGTTT 98-147_Pre-RD_non-RD_RD-Green_ -------------CCCATTGTAG---TTTACCTTATTTTAGGGATAGTTT 98-180_Pre-RD_non-RD_RD-Green_ -------------CCCATTGTAG---TTTACCTTATTTTAGGGATAGTTT J99_Pre-RD_non-RD_RD-Red_1 CCTCCATAGGTAACCCATAGT-----TTTACCTTACTTTAGGGGTAGTTT 26695_Pre-RD_non-RD_RD-Red_1 ----------CCTCCATTTGTAAG-TTTTACCTTACTTTAGGGATAGCTT 98-169_Pre-RD_non-RD_RD-Green_ ----------CCTCCATTTGTAAG-TTTTACCTTATTTTAGGGATAGTTT 98-151_Pre-RD_non-RD_RD-Green_ ----------CCTCCATTTGTAAG-TTTTACCTTATTTTAGGGATAGTTT 98-152_Pre-RD_non-RD_RD-Green_ ----------CCTCCATTTGTAAGGTTTTACCTTATTTTAGGGATAGTTT 98-150_Pre-RD_non-RD_RD-Green_ ----------CCTCCATTTGTAAG-TTTTACCTTATTTTAGGGATAGTTT 98-212_Pre-RD_non-RD_RD-Green_ ----------CCTCCATTTGTAG--TTTTACCTTATTTTAGGGATAGTTT 98-210_Pre-RD_non-RD_RD-Green_ ----------CCTCCATTTGTAG--TTTTACCTTATTTTAGGGATAGTTT 98-149_Pre-RD_non-RD_RD-Green_ ----------CCTCCATTTGTAGT-TTTACCTTTATTTTAGGGATAGTTT 98-170_Pre-RD_non-RD_RD-Green_ ----------CCTCNATT-GTAG---TTTACCTTATTTTAGGGATAGTTT J166_Pre-RD_non-RD_RD-Green_1 -------------------------------------------------- HP1_Pre-RD_non-RD_RD-Red_1 CTTGCGGGTTACCCCCATTGTAG--TTTTACCTTACTTTAGGGATAG-TT 98-208_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-171_Pre-RD_non-RD_RD-Green_ AAGCTTTTAAATAAGGATCTCTTTTATTGTCAAATAACGCCACCATAAAA 98-182_Pre-RD_non-RD_RD-Green_ AAGCTTTTAAATAAGGATCTCTTTTATTGTCAAATAACGCCACCATAAAA 98-147_Pre-RD_non-RD_RD-Green_ AAGCTTTTAAATAAGGATCTCTTTTATTGTCAAATAACGCCACCATAAAA 98-180_Pre-RD_non-RD_RD-Green_ AAGCTTTTAAATAAGGATCTCTTTTATTGTCAAATAACGCCACCATAAAA J99_Pre-RD_non-RD_RD-Red_1 AAGCTTTTAAATAAGGATCTCTTTTATTGTCAAATAACGCTACCATAAAA 26695_Pre-RD_non-RD_RD-Red_1 AAGCTTTTAAATAAGGATCTCTTTTATTGCCAAATAACGCTACCATAAAA 98-169_Pre-RD_non-RD_RD-Green_ AAGCTTTTAAATAAGGATCTCTTTTATTGTCAAATAACGCCACCATAAAA 98-151_Pre-RD_non-RD_RD-Green_ AAGCTTTTAAATAAGGCTCTCTTTTATTGTCAAATAACGCCACCATAAAA 98-152_Pre-RD_non-RD_RD-Green_ AAGCTTTTAAATAAGGCTCTCTTTTATTGTCAAATAACGCCACCATAAAA 98-150_Pre-RD_non-RD_RD-Green_ AAGCTTTTAAATAAGGCCCTCTTTTATTGTCAAATAACGCCACCATAAAA 98-212_Pre-RD_non-RD_RD-Green_ AAGCTTTTAAATAAGGATCTCTTTTATTGTCAAATAACGCCACCATAAAA 98-210_Pre-RD_non-RD_RD-Green_ AAGCTTTTAAATAAGGATCTCTTTTATTGTCAAATAACGCCACCATAAAA 98-149_Pre-RD_non-RD_RD-Green_ AAGCTTTTAAATAAGGATCTCTTTTATTGTCAAATAACGCCACCATAAAA 98-170_Pre-RD_non-RD_RD-Green_ AAGCTTTTAAATAAGGATCTCTTTTATTGTCAAATAACGCCACCATAAAA J166_Pre-RD_non-RD_RD-Green_1 ----------------------------GTCAAATAACGCCACCATAAAA HP1_Pre-RD_non-RD_RD-Red_1 AAGCTTTTAAATAAGAATCCCTTTTATTACCAAATAACGCTACCATAAAA 98-208_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-171_Pre-RD_non-RD_RD-Green_ AATGTTTTCAAAAGCCGACAGATAATTAAAAACTT-----AATGTTTTTA 98-182_Pre-RD_non-RD_RD-Green_ AATGTTTTCAAAAGCCGACAGATAATTAAAAACTT-----AATGTTTTTA 98-147_Pre-RD_non-RD_RD-Green_ AATGTTTTCAAAAGCCGACAGATAATTAAAAACTT-----AATGTTTTTA 98-180_Pre-RD_non-RD_RD-Green_ AATGTTTTCAAAAGCCGACAGATAATTAAAAACTT-----AATGTTTTTA J99_Pre-RD_non-RD_RD-Red_1 AATGATCTCAAAAGCCGACAGATAATTAAAAACTT-----AATGTTTTTA 26695_Pre-RD_non-RD_RD-Red_1 AATGTTTTCAAAAGCCGACAGATAATTAAAAACTTGGTGCAATGTTTTTA 98-169_Pre-RD_non-RD_RD-Green_ AATGTTTTCAAAAGCCGACAGATAATTAAAAACTT-----AATGTTTTTA 98-151_Pre-RD_non-RD_RD-Green_ AATGTTTTCAAAAGCCGACAGATAATTAAAAACTT-----AATGTTTTTA 98-152_Pre-RD_non-RD_RD-Green_ AATGTTTTCAAAAGCCGACAGATAATTAAAAACTT-----AATGTTTTTA 98-150_Pre-RD_non-RD_RD-Green_ AATGTTTTCAAAAGCCGACAGATAATTAAAAACTT-----AATGTTTTTA 98-212_Pre-RD_non-RD_RD-Green_ AATGTTTTCAAAAGCCGACAGATAATTAAAAACTT-----AATGTTTTTA 98-210_Pre-RD_non-RD_RD-Green_ AATGTTTTCAAAAGCCGACAGATAATTAAAAACTT-----AATGTTTTTA 98-149_Pre-RD_non-RD_RD-Green_ AATGTTTTCAAAAGCCGACAGATAATTAAAAACTT-----AATGTTTTTA 98-170_Pre-RD_non-RD_RD-Green_ AATGTTTTCAAAAGCCGACAGATAATTAAAAACTT-----AATGTTTTTA J166_Pre-RD_non-RD_RD-Green_1 AATGTTTTCAAAAGCCGACAGATAATTAAAAACTT-----AATGTTTTTA HP1_Pre-RD_non-RD_RD-Red_1 AAT-----CAAAAGCCGACAGATAATTAAAAACTTGGTGTAATGTTTT-A 98-208_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-171_Pre-RD_non-RD_RD-Green_ ATCG 98-182_Pre-RD_non-RD_RD-Green_ ATCG 98-147_Pre-RD_non-RD_RD-Green_ ATCG 98-180_Pre-RD_non-RD_RD-Green_ ATCG J99_Pre-RD_non-RD_RD-Red_1 ATCG 26695_Pre-RD_non-RD_RD-Red_1 ACCG 98-169_Pre-RD_non-RD_RD-Green_ ATCG 98-151_Pre-RD_non-RD_RD-Green_ ATCG 98-152_Pre-RD_non-RD_RD-Green_ ATCG 98-150_Pre-RD_non-RD_RD-Green_ ATCG 98-212_Pre-RD_non-RD_RD-Green_ ATCG 98-210_Pre-RD_non-RD_RD-Green_ ATCG 98-149_Pre-RD_non-RD_RD-Green_ ATCG 98-170_Pre-RD_non-RD_RD-Green_ ATCG J166_Pre-RD_non-RD_RD-Green_1 ATGC HP1_Pre-RD_non-RD_RD-Red_1 ATCG 98-208_Pre-RD_non-RD_RD-Green_ ----