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/home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/founder_words_dna.txt
>GAACAAGAAAAACAAAAGACG_1 GAACAAGAAAAACAAAAGACG >AGCAATATAGAGACTAACAATCAAATAAAAGTA_1 AGCAATATAGAGACTAACAATCAAATAAAAGTA >GAACAAGAAAAACAAAAGACA_1 GAACAAGAAAAACAAAAGACA >AGCAATATAGAGACTAATAATCAAATAAAAGTA_1 AGCAATATAGAGACTAATAATCAAATAAAAGTA >GAACAAGAACAACAAAAGACA_1 GAACAAGAACAACAAAAGACA >AGCAATACACAG_1 AGCAATACACAG >AAAGATTTGGTTAAAGAACAG_1 AAAGATTTGGTTAAAGAACAG >AAAGATTTGGTTAAAACACAG_1 AAAGATTTGGTTAAAACACAG >AAAGATTTCATTAAATATGTA_1 AAAGATTTCATTAAATATGTA >GCTGAAACTCAAAAGGAAGCT_1 GCTGAAACTCAAAAGGAAGCT >GAAAACGCTAGGGATAGAGCA_1 GAAAACGCTAGGGATAGAGCA >AACAAGAGTGGGATAGAATTG_1 AACAAGAGTGGGATAGAATTG >GAACAAAAACAACAAAAGACA_1 GAACAAAAACAACAAAAGACA >GAACAGGAAAAACAAAAGACA_1 GAACAGGAAAAACAAAAGACA >GAACAAGAACAACAGAAGACA_1 GAACAAGAACAACAGAAGACA >AACAATACGCAA_1 AACAATACGCAA >AAAGATTTGGTTAAATACGCA_1 AAAGATTTGGTTAAATACGCA >GAACAAGAACAACAGAAAACA_1 GAACAAGAACAACAGAAAACA >GAACAAGAAAGACAGAAAACA_1 GAACAAGAAAGACAGAAAACA >GAACAAGAAAGACAGAAGACA_1 GAACAAGAAAGACAGAAGACA >GAACAAGAAAAACAAAAGACC_1 GAACAAGAAAAACAAAAGACC >ATTAAAACACAG_1 ATTAAAACACAG >GAACAAGAAAAAAAGGAAGCT_1 GAACAAGAAAAAAAGGAAGCT >GAAAACGCTAGGGATAGAGCG_1 GAAAACGCTAGGGATAGAGCG >AACAAGAGTGGGATAGAACTG_1 AACAAGAGTGGGATAGAACTG >GAACAGGAAAAACAAAAGACC_1 GAACAGGAAAAACAAAAGACC >ATTAAAGAACAA_1 ATTAAAGAACAA >AAAGATTTAGTTAAAAAAGCA_1 AAAGATTTAGTTAAAAAAGCA >AGCAATATAGAGACTAATAACCAAATAAAAGTA_1 AGCAATATAGAGACTAATAACCAAATAAAAGTA >GAACAAGAAAAGCAAAAGACA_1 GAACAAGAAAAGCAAAAGACA >AACAATACACAA_1 AACAATACACAA >AAAGATTTGGTTAACAAAGCA_1 AAAGATTTGGTTAACAAAGCA >GAACAAGAAAGACAGAAGGCA_1 GAACAAGAAAGACAGAAGGCA >AAAGATTTCATTAAATACGCA_1 AAAGATTTCATTAAATACGCA >GACCGGGACACCCAAGGCGGA_1 GACCGGGACACCCAAGGCGGA >CCAGAAAACCAAGGCCGACCA_1 CCAGAAAACCAAGGCCGACCA >GAAAACAAAAGCCAACCATTC_1 GAAAACAAAAGCCAACCATTC >CCGGAAGGTTCGGTTAAAAAGCC_1 CCGGAAGGTTCGGTTAAAAAGCC >GAACAAGAAAGACAAAAAGCA_1 GAACAAGAAAGACAAAAAGCA >AATAAGAGTGGGATAGAGTTA_1 AATAAGAGTGGGATAGAGTTA >GAACAAGAAAGACGGAAAACA_1 GAACAAGAAAGACGGAAAACA >AATAAGAGTGAGATAGAACTC_1 AATAAGAGTGAGATAGAACTC >GCTAATAGTCAAATAAAAGTA_1 GCTAATAGTCAAATAAAAGTA >GAACAAGAAAAACAAAAAGCA_1 GAACAAGAAAAACAAAAAGCA >AATAAGAGTGAGATAGAGTTA_1 AATAAGAGTGAGATAGAGTTA >GAACAGCAAAAACAAAAGACA_1 GAACAGCAAAAACAAAAGACA >ATTAATACACAA_1 ATTAATACACAA >AGAGATTTGATTAAAGAACAG_1 AGAGATTTGATTAAAGAACAG >AAAGATTTCATTAAAGAAACA_1 AAAGATTTCATTAAAGAAACA >GAAAATGCTAGGGATAGAGCA_1 GAAAATGCTAGGGATAGAGCA >AGCAACATAGAGACTAACAATCAAATAAAAGTA_1 AGCAACATAGAGACTAACAATCAAATAAAAGTA >GAACAAGAAAAACAGAAGACA_1 GAACAAGAAAAACAGAAGACA >AAAGATCTCATTAAAAAAGCA_1 AAAGATCTCATTAAAAAAGCA >GAACAAGAAAAACAGAAGGCA_1 GAACAAGAAAAACAGAAGGCA >AATAAGAGTGAAATAGAGTTA_1 AATAAGAGTGAAATAGAGTTA >AACAAGAGTGAGATAGAACTC_1 AACAAGAGTGAGATAGAACTC >GAACAAGAACACCAGAAGACA_1 GAACAAGAACACCAGAAGACA >GAACAAGAAAGACAAAAGACA_1 GAACAAGAAAGACAAAAGACA >ATTAATACACAG_1 ATTAATACACAG >AAAGATTTCATTAAATACGTA_1 AAAGATTTCATTAAATACGTA >GAGAATGCTAGGGATAGAGCA_1 GAGAATGCTAGGGATAGAGCA >GAACAAGAAAAAAAGGAAGCA_1 GAACAAGAAAAAAAGGAAGCA >AATAAGAGTGGGATAGAACTA_1 AATAAGAGTGGGATAGAACTA >AACAAGAGTGGGATAGAACTC_1 AACAAGAGTGGGATAGAACTC >GCTAATAGTCAAATAAAAGCA_1 GCTAATAGTCAAATAAAAGCA >AATAAAAGTGAGATAGAGTTA_1 AATAAAAGTGAGATAGAGTTA >AAAGATCTCATTAACAAAGCA_1 AAAGATCTCATTAACAAAGCA >GAAAATGCTAGGGATAGAGCG_1 GAAAATGCTAGGGATAGAGCG >AGCAATGTAGAGACTAATAACCAAATAAAAGTA_1 AGCAATGTAGAGACTAATAACCAAATAAAAGTA >AGCAATACGCAAAAAGATTTGGTTAAAGAACAG_1 AGCAATACGCAAAAAGATTTGGTTAAAGAACAG >GAACAAGAAAAACAAAAAACA_1 GAACAAGAAAAACAAAAAACA >GAACAAGAACAACAAAAAACA_1 GAACAAGAACAACAAAAAACA >AGCAATATAGAGACTAATAACAAAATAAGAGTA_1 AGCAATATAGAGACTAATAACAAAATAAGAGTA >AGAGATTTAATTAAAGAACAG_1 AGAGATTTAATTAAAGAACAG >AAAGATTTTATTAAAGAAACA_1 AAAGATTTTATTAAAGAAACA >AATAAGAGTGGGATAAAGTTA_1 AATAAGAGTGGGATAAAGTTA >GAACAAGAAAGACAAAAAACA_1 GAACAAGAAAGACAAAAAACA >GCTCAAGCTCAAAAGGAAGCT_1 GCTCAAGCTCAAAAGGAAGCT >GAACAAGAAGAGCAAAAGACA_1 GAACAAGAAGAGCAAAAGACA >AAAGATTTGATTAAAGAACAG_1 AAAGATTTGATTAAAGAACAG >AACAAGAGTGGGATAGAACTA_1 AACAAGAGTGGGATAGAACTA >ATTAAAACACAA_1 ATTAAAACACAA >AAAGATTTCATTAAAGACCT_1 AAAGATTTCATTAAAGACCT