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/home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/founder_vregions_dna.emacs

>26695_locus1_Red_SN
GAACAAGAAAAACAAAAGACGAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAATAATCAAATAAAAGTAGAACAAGAACAACAAAAGACAAGCAATACACAGAAAGATTTGGTTAAAGAACAGAAAGATTTGGTTAAAGAACAGAAAGATTTGGTTAAAGAACAGAAAGATTTGGTTAAAGAACAGAAAGATTTGGTTAAAACACAGAAAGATTTCATTAAATATGTA

>26695_locus1_Green_SN
GCTGAAACTCAAAAGGAAGCTGAAAACGCTAGGGATAGAGCAAACAAGAGTGGGATAGAATTGGAACAAGAACAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAAAACAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAAAACAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAGGAAAAACAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAGAACAACAGAAGACAGAACAAGAAAAACAAAAGACAAACAATACGCAAAAAGATTTGGTTAAATACGCA

>26695_locus1_Red_NK
GCTGAAACTCAAAAGGAAGCTGAAAACGCTAGGGATAGAGCAAACAAGAGTGGGATAGAATTGGAACAAGAACAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAAAACAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAAAACAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAGGAAAAACAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAGAACAACAGAAGACAGAACAAGAAAAACAAAAGACAAACAATACGCAAAAAGATTTGGTTAAATACGCA

>26695_locus2_Red_SN
GAACAAGAAAAACAAAAGACGAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAATAATCAAATAAAAGTAGAACAAGAACAACAGAAAACAGAACAAGAAAGACAGAAAACAGAACAAGAAAGACAGAAGACAGAACAAGAAAAACAAAAGACCATTAAAACACAGAAAGATTTCATTAAATATGTA

>26695_locus2_Red_NK
GAACAAGAAAAAAAGGAAGCTGAAAACGCTAGGGATAGAGCGAACAAGAGTGGGATAGAACTGGAACAGGAAAAACAAAAGACCATTAAAGAACAAAAAGATTTAGTTAAAAAAGCA

>J166_locus1_Green_SN
GAACAAGAACAACAAAAGACAAGCAATATAGAGACTAATAACCAAATAAAAGTAGAACAGGAAAAACAAAAGACAAGCAATATAGAGACTAATAACCAAATAAAAGTAGAACAGGAAAAACAAAAGACAAGCAATATAGAGACTAATAACCAAATAAAAGTAGAACAGGAAAAACAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAGAAAAGCAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAGAAAAGCAAAAGACAAACAATACACAAAAAGATTTGGTTAACAAAGCA

>J166_locus1_Red_KD
GAACAAGAAAGACAGAAGGCAAACAATACGCAAAAAGATTTGGTTAAAGAACAGAAAGATTTGGTTAAAGAACAGAAAGATTTGGTTAAAGAACAGAAAGATTTCATTAAATACGCA

>J166_locus2_Red_KD
GAACAAGAAAGACAGAAGGCAAACAATACGCAAAAAGATTTGGTTAAAGAACAGAAAGATTTGGTTAAAGAACAGAAAGATTTGGTTAAAGAACAGAAAGATTTCATTAAATACGCA

>J166_locus2_Green_KD
GACCGGGACACCCAAGGCGGACCAGAAAACCAAGGCCGACCAGAAAACAAAAGCCAACCATTCCCGGAAGGTTCGGTTAAAAAGCC

>J170_locus1_Red_NK
GAACAAGAAAAACAAAAGACAGAACAAGAACAACAGAAAACAGAACAAGAAAGACAAAAAGCAAATAAGAGTGGGATAGAGTTAGAACAAGAAAGACGGAAAACAAATAAGAGTGAGATAGAACTCGCTAATAGTCAAATAAAAGTAGAACAAGAAAAACAAAAAGCAAATAAGAGTGAGATAGAGTTAGAACAGCAAAAACAAAAGACAATTAATACACAAAGAGATTTGATTAAAGAACAGAAAGATTTCATTAAAGAAACA

>J170_locus2_Green_SN
GCTGAAACTCAAAAGGAAGCTGAAAATGCTAGGGATAGAGCAAACAAGAGTGGGATAGAACTGGAACAAGAACAACAAAAGACAAGCAACATAGAGACTAACAATCAAATAAAAGTAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAGAAAAACAGAAGACAAGCAATATAGAGACTAATAACCAAATAAAAGTAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAATAATCAAATAAAAGTAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAGAAAAACAGAAGACAAGCAATATAGAGACTAATAACCAAATAAAAGTAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAATAATCAAATAAAAGTAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAGAACAACAAAAGACAGAACAAGAAAAACAAAAGACAAACAATACGCAAAAAGATCTCATTAAAAAAGCA

>J178_locus1_Red_NK
GAACAAGAAAAACAGAAGGCAAATAAGAGTGGGATAGAGTTAGAACAAGAAAGACAGAAAACAGAACAAGAAAGACAGAAAACAAATAAGAGTGAAATAGAGTTAGAACAAGAAAGACGGAAAACAAACAAGAGTGAGATAGAACTCGCTAATAGTCAAATAAAAGTAGAACAAGAAAAACAAAAAGCAAATAAGAGTGAGATAGAGTTAGAACAGCAAAAACAAAAGACAATTAATACACAAAGAGATTTGATTAAAGAACAGAAAGATTTCATTAAAGAAACA

>J178_locus2_Red_EQ
GAACAAGAACACCAGAAGACAGAACAAGAAAGACAAAAGACAGAACAAGAAAGACAAAAGACAGAACAAGAAAAACAAAAGACAATTAATACACAGAAAGATTTCATTAAATACGTA

>J230_locus1_Red_NK
GAACAAGAAAAACAAAAGACAGAACAAGAACAACAGAAAACAGAACAAGAAAGACAAAAAGCAAATAAGAGTGGGATAGAGTTAGAACAAGAAAGACAGAAAACAGAACAAGAAAGACGGAAAACAAATAAGAGTGAGATAGAACTCGCTAATAGTCAAATAAAAGTAGAACAAGAAAAACAAAAAGCAAATAAGAGTGAGATAGAGTTAGAACAGCAAAAACAAAAGACAATTAATACACAAAGAGATTTGATTAAAGAACAGAAAGATTTCATTAAAGAAACA

>J230_locus2_Green_SN
GCTGAAACTCAAAAGGAAGCTGAGAATGCTAGGGATAGAGCAAACAAGAGTGGGATAGAATTGGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAATAACCAAATAAAAGTAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAATAACCAAATAAAAGTAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAATAACCAAATAAAAGTAGAACAAGAACAACAAAAGACAGAACAAGAAAAACAAAAGACAAACAATACGCAAAAAGATCTCATTAAAAAAGCA

>J254_locus1_Red_NK
GAACAAGAAAAAAAGGAAGCAAATAAGAGTGGGATAGAACTAGAACAAGAAAGACAGAAAACAGAACAAGAAAGACAGAAAACAAACAAGAGTGGGATAGAACTCGCTAATAGTCAAATAAAAGCAGAACAAGAAAGACAAAAGACAGAACAAGAAAAACAAAAAGCAAATAAAAGTGAGATAGAGTTAGAACAGCAAAAACAAAAGACAAACAATACACAAAAAGATCTCATTAACAAAGCA

>J254_locus2_Red_EQ
GAACAAGAAAAACAAAAGACAATTAATACACAGAAAGATTTCATTAAAGAAACA

>J254_locus2_Green_SN
GCTGAAACTCAAAAGGAAGCTGAAAATGCTAGGGATAGAGCGAACAAGAGTGGGATAGAACTCGCTAATAGTCAAATAAAAGCAGAACAAGAACAACAGAAGACAGAACAAGAACAACAGAAGACAGAACAAGAACAACAGAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAGGAAAAACAAAAGACAGAACAGGAAAAACAAAAGACAGAACAGGAAAAACAAAAGACAAGCAATATAGAGACTAATAATCAAATAAAAGTAGAACAAGAACAACAAAAGACAGAACAAGAAAAACAAAAGACAAACAATACACAAAAAGATCTCATTAACAAAGCA

>J258_locus1_Red_SN
GAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAATAACCAAATAAAAGTAGAACAAGAAAAACAAAAGACAAGCAATGTAGAGACTAATAACCAAATAAAAGTAGAACAAGAACAACAAAAGACAAGCAATACGCAAAAAGATTTGGTTAAAGAACAGAAAGATTTGGTTAAAGAACAGAAAGATTTGGTTAAAGAACAGAAAGATTTGGTTAAAGAACAGAAAGATTTCATTAAATACGCA

>J258_locus2_Green_SN
GCTGAAACTCAAAAGGAAGCTGAAAATGCTAGGGATAGAGCAAACAAGAGTGGGATAGAATTGGAACAAGAAAAACAAAAAACAGAACAAGAACAACAAAAAACAGAACAAGAACAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAATAACAAAATAAGAGTAGAACAAGAACAACAAAAGACAGAACAAGAAAAACAAAAGACAATTAATACACAGAAAGATTTCATTAAATATGTA

>J282_locus1_Red_NK
GAACAAGAAAAACAAAAGACAGAACAAGAACAACAGAAAACAGAACAAGAAAGACAAAAAGCAAATAAGAGTGGGATAGAGTTAGAACAAGAAAGACAGAAAACAAACAAGAGTGGGATAGAACTCGCTAATAGTCAAATAAAAGCAGAACAAGAAAGACAAAAGACAGAACAAGAAAAACAAAAAGCAAATAAGAGTGAAATAGAGTTAGAACAGCAAAAACAAAAGACAATTAATACACAAAGAGATTTAATTAAAGAACAGAAAGATTTTATTAAAGAAACA

>J282_locus2_Red_EQ
GAACAAGAACAACAAAAGACAGAACAAGAAAAACAAAAGACAATTAATACACAGAAAGATTTCATTAAATACGCA

>J99_locus1_Red_NK
GAACAAGAAAAAAAGGAAGCAAATAAGAGTGGGATAAAGTTAGAACAAGAAAGACAGAAAACAGAACAAGAAAGACAGAAGACAAATAAGAGTGAGATAGAGTTAGAACAAGAAAGACAAAAAACAAACAAGAGTGGGATAGAACTCGCTAATAGTCAAATAAAAGCAGAACAAGAAAGACAAAAGACAGAACAAGAAAAACAAAAAGCAAATAAGAGTGAGATAGAGTTAGAACAGCAAAAACAAAAGACAATTAATACACAAAGAGATTTGATTAAAGAACAGAAAGATTTCATTAAAGAAACA

>J99_locus2_Green_SN
GCTCAAGCTCAAAAGGAAGCTGAAAACGCTAGGGATAGAGCGAACAAGAGTGGGATAGAACTGGAACAAGAAGAGCAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAGAACAACAAAAGACAGAACAGGAAAAACAAAAGACAAACAATACGCAAAAAGATTTGGTTAACAAAGCA

>M-HP1_Locus1_Red_NK
GAACAAGAAAAACAGAAGGCAAATAAGAGTGGGATAGAGTTAGAACAAGAAAAACAGAAGACAGAACAAGAAAAACAAAAAGCAAATAAGAGTGAGATAGAGTTAGAACAAGAAAGACAGAAAACAAACAAGAGTGGGATAGAACTCGCTAATAGTCAAATAAAAGCAGAACAAGAAAGACAGAAGACAGAACAAGAAAAACAAAAAGCAAATAAGAGTGAGATAGAGTTAGAACAGCAAAAACAAAAGACAATTAATACACAAAGAGATTTGATTAAAGAACAGAAAGATTTGATTAAAGAACAGAAAGATTTCATTAAAGAAACA

>M-HP1_Locus2_Green_SN
GCTGAAACTCAAAAGGAAGCTGAAAATGCTAGGGATAGAGCAAACAAGAGTGGGATAGAACTAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAATAATCAAATAAAAGTAGAACAAGAACAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAATAATCAAATAAAAGTAGAACAAGAACAACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACCATTAAAACACAAAAAGATTTCATTAAAGACCT