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/home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/founder_red_and_monkey_l2_red.meg
#Mega Title: founder_red_and_monkey_l2_red.aln #J178_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACGCAGAGACAGCTAAC ACAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAGCGCCATTACAAATATAATCAGA TCAATTAGTGGGTTTTTTACAAAGATCGCAAAGAGAGTTAGAGAACTTGTAAAAAAACAC CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCGAAA GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGTGGCAAGTTTATTATTAGCCGCTTGTAGC GTTGGTGATACTGATAAATAGATAGAGTTA #J282_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACGCAGAGACAGCTAAC ACAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAGCACCATTACAAATATAATCAGA TCAATTGGTGGGTTTTTTACAAAAATTGCAAAGAAAGTTAGAGAACTTGTAAAAAAACAC CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGCATGCAAGAGGGCAAAA GAATTAGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGC GTTGGTGATACTGATAAACAGATAGAGTTA #J170_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACGCAGAGACAGCTGAC ACAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAGCGCCATTACAAATATAATCAGA TCAATTAGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGCATGCAGGAAAGCGAAA GAATTAGACGATAAAGTCCAAGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAGC GTTGGTGATACTGATAAACAGATAGAGTTA #J238_Red_locus1_NK ATGGAATCAGTAAAAACAGAAAAAACAAATAAAGTTGGCAAAAACACAGAGACAGCTGAC ACAAAGGCAAATAAAGAGGCTCATTTAAAACAAGCGAGTGCCATTACAAATACGCTCAGA TCAATTGGTGGGTTTTTTACAAAAATTGTAAAGAGAGTTAGAGAACTTGTAAAAAAACAC CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGCATGCAAGAAAGCGAAA GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTCTTCAGGATTAACAATAGCGGCAAGTTTATTACTAGCCGCTTGTAGC GCTGGTGATATTGATAAACAAATAGAGTTA #J178_Red_locus2_EQ ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACGCAGAGACAGCTAAC ACAAAGGCAAATAAAGAGGCTCATTTTAAACAAGCGAGCGCCATTACAAATACGCTCAGA TCAATTGGTGGGTTTTTTACAAAGATCGCAAAGAGAGTTAGAGAACTTGTAAAAAAACAC CCCAAGAAAAGCAGGGCGGCATTAGTAGTATTGACCCATGTTGCATGCAGGAAAGCGAAA GAATTGGACGATAAAGTCCAAGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAGC GTTGGTGATATTGATAAACAAATAGAGTTA #J166_Red_locus1_KD ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAGT GTTGGTGATATTGATAAACAAATAGAACTA #98-149_Red_locus2_KD ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------------------TGCGTGCA-GAAAGCAAA- GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGT GTTGGTGATATTGATAAACAAATAGAACTA #98-147_Red_locus2_KD ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------CGTGGGCGAGCAA-- GA-TTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGT GTTGGTGATATTGATAAACAAATAGAACTA #98-182_Red_locus2_KD ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------CCCTGTGCGTGCGGCGAAGCAA-- GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGT GTTGGTGATATTGATAAACAAATAGAACTA #98-171_Red_locus2_KD ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------------------TGTGGTGCGGCGAAGCAAA- GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGT GTTGGTGATATTGATAAACAAATAGAACTA #98-170_Red_locus2_KD ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------GTTTGACCCTGTTGCGGGCGAAAGCAAA- GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGT GTTGGTGATATTGATAAACAAATAGAACTA #98-180_Red_locus2_KD ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------------------CCTGTGCGGCAGAAGCAA- AGATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGT GTTGGTGATATTGATAAACAAATAGAACTA #98-212_Red_locus2_KD ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------CTGTGCGGC-GAAGCAA- AGATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGT GTTGGTGATATTGATAAACAAATAGAACTA #98-152_Red_locus2_KD ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -GATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAATTCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGT GTTGGTGATATTGATAAACAAATAGAACTA #98-151_Red_locus2_KD ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------------------------------GAAGCAA- AGATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGT GTTGGTGATATTGATAAACAAATAGAACTA #98-208_Red_locus2_KD ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------GGGCAGGAAGCAAA- GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGT GTTGGTGATATTGATAAACAAATAGAACTA #98-169_Red_locus2_KD ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------------------GGTGCGGGCAGAAGCAAA- GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGT GTTGGTGATATTGATAAACAAATAGAACTA #98-210_Red_locus2_KD ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------GCAGAAGCAAA- GAATTGGACGATAAAGTCCAGGATAAATCCAAACCAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGT GTTGGTGATATTGATAAACAAATAGAACTA #J254_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACACAGAGACAGCTAAC GCAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAATGCCATTACAAATATAATCAGA TCAATTAGTGGGTTTTTTACAAAAATTGCAAAGAAAGTTAGAGAACTTGTAAAAAAACAT CCCAAGAAAAGCAATGCGGCATTAGTAGTATTAACCCATGTTGCGTGCAAGAAAGCGAAA GAATTAGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT TGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAGC GCTGGTGATATTGATAAACAAATAGAACTA #J282_Red_locus2_EQ ATGGAATCAGTAAAAACAGGAAAAGCAAATAAAGTTGGCAAAAACACAGAGACAGCTAAC ACAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA TCAATTGGTGGGTTTTTTACAAAGATCGCAAAGAGAGTTAGAGAACTTGTAAAAAGACAT CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGTGTGCAGGAAAGCGAAA GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCGAATCAAT TGGTGGAAGTATTC---AGGACTCACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGT GCTGGTGATATTGATAAACAGATAGAGTTA #98-150_Red_locus2_EQ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------GTGTGTGCGGAAGCGAAA GA-TTAGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCGAATCAAT TGGAGGAAGTATTC---AGGACTCACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGT GCTGGTGATATTGATAAACAGATAGAGTTA #J258_Red_locus1_SN ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACACAGAGACAGCTAAC ACAAAGGCAAATAAAGAGGCTCATTTTAAACAAGCGAGCGCCATTACAAATACGCTCAGA TCAATTGGTGGGTTTTTTACAAAGATCGCAAAGAGAGTTAGAGAACTTGTAAAAAGACAC CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGTGTGCAGGAAAGCGAAA GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCGAATCAAT TGGTGGAAGTATTC---AGGACTCACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGT GCTGGTGATATTGATAAACAGATAGAGTTA