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/home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/founder_cons_inc.aln
CLUSTAL W (1.83) multiple sequence alignment J166_Red_locus1_KD GAACAAAATTGCCAAGAAAATCA-TGGCCAATTCTTTATTAAAAAAGGAG J166_Red_locus2_KD GAACAAAATTGCCAAGAAAATCA-TGGCCAATTCTTTATTAAAAAAGGAG J258_Green_locus2_SN GAACAAAATTGCCAAGAAAATCA-TGGCCAATTCTTTATTAAAAAAGGAG J282_Red_locus2_EQ GAACAAAATTGCCAAGAAAATCA-TGGCCAATTCTTTATTAAAAAAGTAG J178_Red_locus2_EQ GAACAAAATTGCCAAGAAAATCA-TGGCCAATTCTTTATTAAAAAAGGAG 26695_Red_locus1_SN GAACAAAATTGCCAAGAAAATCA-TAATCAATTCTTTATTGAAAAAGGAG 26695_Red_locus2_SN GAACAAAATTGCCAAGAAAATCA-TAATCAATTCTTTATTGAAAAAGGAG 26695_Red_locus2_NK GAACAAAATTGCCAAGAAAATCA-TGGCCAATTCTTTATGAAAAAATTAG 26695_Green_locus1_SN GAACAAAATTGCCAAGAAAATCA-TAATCAATTCTTTATTAAAAAATTAG 26695_Red_locus1_NK GAACAAAATTGCCAAGAAAATCA-TAATCAATTCTTTATTAAAAAATTAG J170_Green_locus2_SN GAACAAAATTGCCAAGAAAATCA-TAATCAATTCTTTATTAAAAAATTAG J258_Red_locus1_SN GAACAAAATTGCCAAGAAAATCA-TAATCAATTCTTTATTAAAAAAGGAG J238_Green_locus2_SN GAACAAAATTGCCAAGAAAATCA-TAATCAATTCTTTATTAAAAAAGTAG J254_Red_locus1_NK GAACAAAATTGCCAAGAAAATCA-TAATCAATTCTTTATTAAAAAATTAG J254_Green_locus2_SN GAACAAAATTGCCAAGAAAATCA-TAATCAATTCTTTATTAAAAAATTAG J166_Green_locus1_SN GAACAAAATTGCCAAGAAAACCA-TAGTCAATTCTTTATTAAAAAATTAG J99_Green_locus2_SN GAACAAAATTGCCAAGAAAATCA-TAATCAATTCTTTATTAAAAAATTAG J166_Green_locus2_KD GAACAAAATTGCCAAGAAAATCG-TAGTCAAT-CTTTATTAAAAAATTAG M-HP1_Green_Locus GAACAAAATTGCAAAGAAAATCA-TGGTCAATTCTTTATTGAAAAAGGAG J254_Red_locus2_EQ GAACAAAATTGCCAAGAAAAACA-TGGCCAATTGTTTATTAAAAAAGCAA J99_Red_locus1_NK GAACAAAATTGCCAAGAAAAACA-TGGCCAATTGTTTATTAAAAAAGCAA J170_Red_locus1_NK GAACAAAATTGCCAAGAAAAACA-TGGCCAATTGTTTATTAAAAAAGCAA J178_Red_locus1_NK GAACAAAATTGCCAAGAAAAACA-TGGCCAATTGTTTATTAAAAAGGCAA J238_Red_locus1_NK GAACAAAATTGCCAAGAAAAACA-TGGCCAATTGTTTATTAAAAAGGCAA J282_Red_locus1_NK GAGCAAAATTGCCAAGAAAAACA-TGGTCAATTATTTATTAAAAGGGCAA M-HP1_Red_Locus GAACAAAATTGCCAAGAAAAACACTGGCCAATTGTTTATTAAAAAAGCAA ** ********* ******* * * **** ***** *** * J166_Red_locus1_KD GGATTAAGGCTGGTATTGGT------------ATAGAAGTAGAAG-CTGA J166_Red_locus2_KD GGATTAAGGCTGGTATTGGT------------ATAGAAGTAGAAG-CTGA J258_Green_locus2_SN GAATTAAGGCTGGTATTGGT------------ATAGAAGTAGAAG-CTGA J282_Red_locus2_EQ GCATTAAGGGTGGTATTGGT------------ATAGAAGTAGAAG-CTGA J178_Red_locus2_EQ GAATTAAGGCTGGTATTGGT------------ATAGAAATAGAAGGCTGA 26695_Red_locus1_SN GAATTAAGGCTGGTATTGGT------------ATAGAAGTAGAAG-CTGA 26695_Red_locus2_SN GAATTAAGGCTGGTATTGGT------------ATAGAAGTAGAAG-CTGA 26695_Red_locus2_NK GAATTAAGGGTGGCATTGCT------------ATAGAAGTAGAAG-CTGA 26695_Green_locus1_SN GAATTAAGGGTGGCATTGCT------------ATAGAAGTAGAAG-CTGA 26695_Red_locus1_NK GAATTAAGGGTGGCATTGCT------------ATAGAAGTAGAAG-CTGA J170_Green_locus2_SN GAATTAAGGGTGGTATTGCT------------ATAGAAGTAGAAG-CTGA J258_Red_locus1_SN GAATTAAGGCTGGTATTGCTG---GTATTGCTATAGAAGTAGAAG-CTGA J238_Green_locus2_SN GAATTAAGGGTGGTATTGCT------------GTAGAAGTAGAAG-CTGA J254_Red_locus1_NK GAATTAAGGGTGGCATTGCT------------ATAGAAGTAGAAG-CTGA J254_Green_locus2_SN GAATTAAGGGTGGCATTGCT------------ATAGAAGTAGAAG-CTGA J166_Green_locus1_SN GAATTAAGGGTGGCATTGCT------------ATAGAAGTAGAAG-CTGA J99_Green_locus2_SN GAATTAAGGCTGGCATTGCT------------ATAGAAATAGAAG-CTGA J166_Green_locus2_KD GAATTAAGG--------GGTG---GCATTGCTATAGAAATAGAAG-CTGA M-HP1_Green_Locus GAATTAAGGCTGGCATTGGTG---GCATTACTATAGAAGCAGAAG-CTAA J254_Red_locus2_EQ GAATTAAGACCGGTATTACCACTGGTATTGCTATAGAGATAGAAG-CTGA J99_Red_locus1_NK GAATTAAGACCGGTATTACTACTGGTATTGCCATAGAAATAGAAG-CTGA J170_Red_locus1_NK GAATTAAGACCGGTATTACTACTGGTATTGCTATAGAAATAGAAG-CT-- J178_Red_locus1_NK GAATTAAGACCGGTATTACTACTGGTATTGCTATAGAAATAGAAG-CTGA J238_Red_locus1_NK GAATTAAAACCGGTATTACTACTGGTATTGCTAT-GAAGTAGAAG-CTGA J282_Red_locus1_NK GAATTAAGACCGGCATTACTACCGGTATTGCTATAGAAATAGAAG-CTGA M-HP1_Red_Locus GAATTAAGACCGGTATTACTACTGGTATTGCTATAGAAATAGAAG-CTGA * ***** * ** ***** ** J166_Red_locus1_KD ATGCAAAACCCCTAAACCCACAAAAACCAATCAAACCC------------ J166_Red_locus2_KD ATGCAAAACCCCTAAACCCACAAAAACCAATCAAACCCCTATCCAGCCAA J258_Green_locus2_SN ATGCAAACCCTACC------------------------------------ J282_Red_locus2_EQ ATGCAAACCCTA-------------------------------------- J178_Red_locus2_EQ ATGCAAACCCC--------------------------------------- 26695_Red_locus1_SN ATGCAAAACCCC-TAAACCTGCAAAAACCAATCAAACCCCTATCCAGCCA 26695_Red_locus2_SN ATGCAAAACCCC-TAAACCTGCAAAAACCAATCAAACCCCTATCCAGCCA 26695_Red_locus2_NK ATGCAAAACCCC-TAAACCTGCAAAAACCAATCAAACCCCTATCCAGCCA 26695_Green_locus1_SN ATGCAAAACCCC-TAAACCTGCAAAAACCAATCAAACCCCTATCCAGCCA 26695_Red_locus1_NK ATGCAAAACCCC-TAAACCTGCAAAAACCAATCAAACCCCTATCCAGCCA J170_Green_locus2_SN ATGCAAACCCTA-C------------------------------------ J258_Red_locus1_SN ATGCAAACCCTA-------------------------------------- J238_Green_locus2_SN ATGCAACCTACC-------------------------------------- J254_Red_locus1_NK AT------------------------------------------------ J254_Green_locus2_SN ATGTAAAACCTC-TAAACCCACAAAAACCAATCAAACCCCTACCCAGCCA J166_Green_locus1_SN ATGCAAAACCCC-TAAACCCACAAAAACCAATCAAACCCCTATCCAGCCA J99_Green_locus2_SN ATGCAAAACCCC-TAAACCCACAAAAACCAATCAAACCCCTATCCAGCCA J166_Green_locus2_KD ATGCAAAACCCC-TAAACCCACAAAAACAAACCAAACCCCTATCCAGTCA M-HP1_Green_Locus ATGCAAAACCCCCTAAACCCACAAAAACAAACCAAACCCCTATCCAGCCA J254_Red_locus2_EQ ATGCAAAACCCC-TAAACCTGCAAAAACCAATCAAACCCCTATCCAGCCA J99_Red_locus1_NK ATGCAAAACCCC-TAAACCTGCAAAAACCAATCAAACCCCTATCCAGCCA J170_Red_locus1_NK -------------------------------------------------- J178_Red_locus1_NK ATGCAAACCCTACCC----------------------------------- J238_Red_locus1_NK ATGCAAACCCTACCA----------------------------------- J282_Red_locus1_NK ATGCAAACCCTAC------------------------------------- M-HP1_Red_Locus ATGCAAAACCCCTAAACCCACAAAAACCAATCAAACCCCTATCCAGCCAA J166_Red_locus1_KD -------------------------------------------------- J166_Red_locus2_KD AACACCTCCCAAACTCTAAACAACCCCACTCTCAAAGAGGATCAAAAACG J258_Green_locus2_SN -------------------------------------------------- J282_Red_locus2_EQ -------------------------------------------------- J178_Red_locus2_EQ -------------------------------------------------- 26695_Red_locus1_SN AAACACCTCCCAAACTCTAAACAACCCCGCTCTCAAAGAGGATCAAAAGC 26695_Red_locus2_SN AAACACCTCCCAAACTCTAAACAACCCCGCTCTCAAAGAGGATCAAAAGC 26695_Red_locus2_NK AAACACCTCCCCAACTCTAAACAACCCCACTCTCAAAGAGGATCAAAAGC 26695_Green_locus1_SN AAACACCTCCCAAACTCTAAACAACCTCATTCTCAAAGAGGATCAAAAGC 26695_Red_locus1_NK AAACACCTCCCAAACTCTAAACAACCTCATTCTCAAAGAGGATCAAAAGC J170_Green_locus2_SN -------------------------------------------------- J258_Red_locus1_SN -------------------------------------------------- J238_Green_locus2_SN -------------------------------------------------- J254_Red_locus1_NK -------------------------------------------------- J254_Green_locus2_SN AAACACCTCCCCAACTCTAAACAACCCCGCTCTCAAAGAGGATCAAAAGC J166_Green_locus1_SN AAACACCTCCCAAACTCTAAACAACCCCACTCTCAAAGAGGATCAAAAAC J99_Green_locus2_SN AAACACCTCCCAAACTCCAAACAACCCCATTCTCAAAGAGGATCAAAAGC J166_Green_locus2_KD AAACACCTTCCAAACTCCAAGCAACCCTACTCTCAAAGAGGATCAAAAGC M-HP1_Green_Locus AAACACCTTCCAAACTCCAAGCAACCCCACTCTCAAAGAGGATCAAAAGC J254_Red_locus2_EQ AAACACCTCCCAAACTCTAAACAACCCCACTCTCAAAGAGGATCAAAAGC J99_Red_locus1_NK AAACACCTCCCAAACTCTAAACAACCCCGCTCTCAAAGAGGATCAAAAGC J170_Red_locus1_NK -------------------------------------------------- J178_Red_locus1_NK -------------------------------------------------- J238_Red_locus1_NK -------------------------------------------------- J282_Red_locus1_NK -------------------------------------------------- M-HP1_Red_Locus AACACCTCCCAAACTCTAAACAACCTCGCTCTCAAAGAGGATCAAAAGCG J166_Red_locus1_KD -------------------------------------------------- J166_Red_locus2_KD CAAGAGTTTATCGCTTATTTGCAAAAAGAGCTAGAATCTCTGCCCTATTC J258_Green_locus2_SN -------------------------------------------------- J282_Red_locus2_EQ -------------------------------------------------- J178_Red_locus2_EQ -------------------------------------------------- 26695_Red_locus1_SN GCAAGAGCTTATCGCTTATTTGCAAAAAGAGCTAGAA-TTTCTGCCCTAT 26695_Red_locus2_SN GCAAGAGCTTATCGCTTATTTGCAAAAAGAGCTAGAA-TCTCTGCCCTAT 26695_Red_locus2_NK GCAAGAGCTTATCGCTTATTTGCAAAAAGAGTTAGAA-TCTCTGCCCTAT 26695_Green_locus1_SN GCAAGAGTTTATCGCTTATTTGCAAAAAGAGCTAGAA-TTTCTGCCCTAT 26695_Red_locus1_NK GCAAGAGTTTATCGCTTATTTGCAAAAAGAGCTAGAA-TTTCTGCCCTAT J170_Green_locus2_SN -------------------------------------------------- J258_Red_locus1_SN -------------------------------------------------- J238_Green_locus2_SN -------------------------------------------------- J254_Red_locus1_NK -------------------------------------------------- J254_Green_locus2_SN GCAAGAGCTTATAGCTTATTTGCAAAAAGAATTAAAAATCTCTGCCCTAT J166_Green_locus1_SN GCAAGAGTTTATCGCTTATTTGCAAAAAGAGCTGGAA-TCTTTGCCCTAT J99_Green_locus2_SN GCAAGAGCTTATCGCTTATTTGCAAAAAGAGCTAGAA-TCTCTGCCCTAT J166_Green_locus2_KD GCAAGAGCTTATAGCTTATTTGCAAAAAGAATTAGAA-TCTCTGCCCTAT M-HP1_Green_Locus GCAAGAGCTTATAGCTTATTTGCAAAAAGAGCTAGAA-TCTCTGCCCTAT J254_Red_locus2_EQ GCAAGAGCTTATAGCTTATTTGCAAAAAGAGCTAGAA-TCTCTGCCCTAT J99_Red_locus1_NK GCAAGAGCTTATCGCTTATTTGCAAAAAGAGCTAGAA-TCTCTGCCCTAT J170_Red_locus1_NK -------------------------------------------------- J178_Red_locus1_NK -------------------------------------------------- J238_Red_locus1_NK -------------------------------------------------- J282_Red_locus1_NK -------------------------------------------------- M-HP1_Red_Locus CAAGAGCTTATAGCTTATTTGCAAAAAGAGCTAGAATCTCTGCCCTATTC J166_Red_locus1_KD -------------------------------------------------- J166_Red_locus2_KD ACAAAAAGCTATCGCTAAACAAGTGAATTTTTATAAACCAAGTTCTGTCG J258_Green_locus2_SN -------------------------------------------------- J282_Red_locus2_EQ -------------------------------------------------- J178_Red_locus2_EQ -------------------------------------------------- 26695_Red_locus1_SN TCGCAAAAAGCTATCGCTAAACAAGTGGATTTTTACAGGCCAAGTTCTAT 26695_Red_locus2_SN TCACAAAAAGCTATCGCTAAACAAGTGGATTTTTATAGACCAAGTTCTAT 26695_Red_locus2_NK TCACAAAAAGCTATCGCTAAACAAGTGAATTTTTACAGGCCAAGTTCTGT 26695_Green_locus1_SN TCGCAAAAAGCTATCGCTAAACAAGTGAATTTCTATAAACCAAGTTCTAT 26695_Red_locus1_NK TCGCAAAAAGCTATCGCTAAACAAGTGAATTTCTATAAACCAAGTTCTAT J170_Green_locus2_SN -------------------------------------------------- J258_Red_locus1_SN -------------------------------------------------- J238_Green_locus2_SN -------------------------------------------------- J254_Red_locus1_NK -------------------------------------------------- J254_Green_locus2_SN TCGCAAAAAGCTATCGCTAAACAAGTGGATTTTTATAAACCAAGTTCTAT J166_Green_locus1_SN TCACAAAAAGCTATAGCTAAACAAGTGAATTTTTATAAACCAAGTTCTGT J99_Green_locus2_SN TCACAAAAAGCTATCGCTAAACAAGTGGATTTTTATAGGCCAAGTTCTAT J166_Green_locus2_KD TCACAAAAAGCTATCGCTAAACAAGTGGATTTTTATAAACCAAGTTCTAT M-HP1_Green_Locus TCACAAAAAGCTATCGCTAAACAAGTGAATTTTTATAGACCAAGTTCTAT J254_Red_locus2_EQ TCACAAAAAGCTATCGCTAAACAAGTGGATTTTTATAAACCAAGTTCTAT J99_Red_locus1_NK TCGCAAAAAGCTATCGCTAAACAAGTGGATTTTTATAAACCAAGTTCTAT J170_Red_locus1_NK -------------------------------------------------- J178_Red_locus1_NK -------------------------------------------------- J238_Red_locus1_NK -------------------------------------------------- J282_Red_locus1_NK -------------------------------------------------- M-HP1_Red_Locus ACAAAAAGCTATCGCTAACCAAGTGGATTTTTATAAACCAAGTTCTATCG J166_Red_locus1_KD -------------------------------------------------- J166_Red_locus2_KD CTTATTTAGAACTAGATCCTAGAGATTTTAAGGTTACAGAAGAATGGCAA J258_Green_locus2_SN -------------------------------------------------- J282_Red_locus2_EQ -------------------------------------------------- J178_Red_locus2_EQ -------------------------------------------------- 26695_Red_locus1_SN CGCTTATTTAGAACTAGATCCTAGAGATTTTAAGGTTACAGAAGAATGGC 26695_Red_locus2_SN CGCTTATTTAGAACTAGACCCTAGAGATTTTAATGTTACAGAAGAATGGC 26695_Red_locus2_NK CGCTTATTTAGAACTAGACCCTAGAGATTTTAAGGTTACAGAAGAATGGC 26695_Green_locus1_SN CGCTTATTTAGAACTAGATCCTAGAGATTTTAAGGTTACAGAAGAATGGC 26695_Red_locus1_NK CGCTTATTTAGAACTAGATCCTAGAGATTTTAAGGTTACAGAAGAATGGC J170_Green_locus2_SN -------------------------------------------------- J258_Red_locus1_SN -------------------------------------------------- J238_Green_locus2_SN -------------------------------------------------- J254_Red_locus1_NK -------------------------------------------------- J254_Green_locus2_SN CGCTTATTTAGAACTAGACCCTAGAGATTTTAACGTTACAGAAGAATGGC J166_Green_locus1_SN CGCTTATTTAGAACTAGATCCTAGAGATTTTAAGGTTACAGAAGAATGGC J99_Green_locus2_SN CGCTTATTTAGAACTAGATCCTAGAGATTTTAACGCTACAGAAGAATGGC J166_Green_locus2_KD CGCCTATTTAGAACTAGATCCTAGAGATTTTAAGGTTACAGAAGAATGGC M-HP1_Green_Locus CGCCTATTTAGAACTAGATCCTAGAGATTTTAACGCTACAGAAGAATGGC J254_Red_locus2_EQ CGCTTATTTAGAACTAGACCCTAGA--TTTTAAAGCTACAGAAGAATGGC J99_Red_locus1_NK CGCTTATTTAGAACTAGACCCTAGAGATTTTAAGGTTACAGAAGAATGGC J170_Red_locus1_NK -------------------------------------------------- J178_Red_locus1_NK -------------------------------------------------- J238_Red_locus1_NK -------------------------------------------------- J282_Red_locus1_NK -------------------------------------------------- M-HP1_Red_Locus CTTATTTAGAACTAGATCCTAGAGATTTTAACGCTACAGAAGAATGGCAA J166_Red_locus1_KD -------------------------------------------------- J166_Red_locus2_KD AAAGAAAATCTAAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTGAAAT J258_Green_locus2_SN -------------------------------------------------- J282_Red_locus2_EQ -------------------------------------------------- J178_Red_locus2_EQ -------------------------------------------------- 26695_Red_locus1_SN AAAAAGAAAATCTAAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-A 26695_Red_locus2_SN AAAAAGAAAATTTAAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-A 26695_Red_locus2_NK AAAAAGAAAATCTAAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTGGA 26695_Green_locus1_SN AAAAAGAAAATCTAAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-A 26695_Red_locus1_NK AAAAAGAAAATCTAAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-A J170_Green_locus2_SN -------------------------------------------------- J258_Red_locus1_SN -------------------------------------------------- J238_Green_locus2_SN -------------------------------------------------- J254_Red_locus1_NK -------------------------------------------------- J254_Green_locus2_SN AAAAAGAAAATCTAAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-A J166_Green_locus1_SN AAAAAGAAAATCTAAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-A J99_Green_locus2_SN AAAAAGAAAATTTAAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-A J166_Green_locus2_KD AAAACGAAAACCTGAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-A M-HP1_Green_Locus AAAAAGAAAATCTAAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-A J254_Red_locus2_EQ AAAAAGAAAATCTAAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-A J99_Red_locus1_NK AAAAAGAAAATTTAAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-A J170_Red_locus1_NK -------------------------------------------------- J178_Red_locus1_NK -------------------------------------------------- J238_Red_locus1_NK -------------------------------------------------- J282_Red_locus1_NK -------------------------------------------------- M-HP1_Red_Locus AAAGAAAATCTAAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTGAAAT J166_Red_locus1_KD -------------------------------------------------- J166_Red_locus2_KD GAGGGATTTAAAACCAGACCCACAAGCCCACCTTTCAGTCTCTCAAAGCC J258_Green_locus2_SN -------------------------------------------------- J282_Red_locus2_EQ -------------------------------------------------- J178_Red_locus2_EQ -------------------------------------------------- 26695_Red_locus1_SN AATGAGAA------------ACCCACAAGCCCACCTTTCAAACTCTCAAA 26695_Red_locus2_SN AATGAGGAGTTTAAAACCAGACTCACAAGCCCACCTTTCAACCTCTCAAA 26695_Red_locus2_NK AATGAGAA------------ACCCACAAGCCCACCTTTCAACCTCTCAAA 26695_Green_locus1_SN AATGAGGGATTTAAAACCAGACCCACAAGCCCACCTTCCAACCTCTCAAA 26695_Red_locus1_NK AATGAGGGATTTAAAACCAGACCCACAAGCCCACCTTCCAACCTCTCAAA J170_Green_locus2_SN -------------------------------------------------- J258_Red_locus1_SN -------------------------------------------------- J238_Green_locus2_SN -------------------------------------------------- J254_Red_locus1_NK -------------------------------------------------- J254_Green_locus2_SN AATGAGGAGTTTAAAACCAGACCCACAAGCCCACCTTTCAACCTCTCAAA J166_Green_locus1_SN AATGAGGGATTTAAAACCAGACCCACAAGCCCACCTTTCAAACTCTCAAA J99_Green_locus2_SN AATGAGGAGTTTAAAACCAGACCCACAAGCCCACCTTTCAACCTCTCAAA J166_Green_locus2_KD AATGAG------------AAACCCACAAGCCCACCTTTCAACCTCTCAAA M-HP1_Green_Locus AATGAGGCATTTAAAACCAGACTCACAAGCCCACCTTCCAACCTCTCAAA J254_Red_locus2_EQ AATGAGGAGTTTAAAACCAAACCCACAAGCCCACCTTTCAACCTCTCAAA J99_Red_locus1_NK AATGAG------------AAACCCACAAGCCCACCTTCCAACCTCTCAAA J170_Red_locus1_NK -------------------------------------------------- J178_Red_locus1_NK -------------------------------------------------- J238_Red_locus1_NK -------------------------------------------------- J282_Red_locus1_NK -------------------------------------------------- M-HP1_Red_Locus GAGGCATTTAAAACCAGACTCACAAGCCCACCTTCCAACCTCTCAGAGCC J166_Red_locus1_KD -------------------------------------------------- J166_Red_locus2_KD TTTTGTTTATTCAAGAAATATTTGCTGATGTTAATAAAGAAATAAAAGTA J258_Green_locus2_SN -------------------------------------------------- J282_Red_locus2_EQ -------------------------------------------------- J178_Red_locus2_EQ -------------------------------------------------- 26695_Red_locus1_SN GCCTTTTGTTCGTTCAAAAAATATTTGCTGA-TGTTAATAAAGAAATAGA 26695_Red_locus2_SN GCCTTTTGTTCGTTCAAAAAATATTTGCTGA-TGTTAATAAAGAAATAAA 26695_Red_locus2_NK GCCTTTTGTTCGTTCAAAAAATATTTGCTGAATGTTAATAAAGAAATAGA 26695_Green_locus1_SN GCCTTTTGTTCGTTCAAAAAATATTTGCTGA-TGTTAATAAAGAAATAGA 26695_Red_locus1_NK GCCTTTTGTTCGTTCAAAAAATATTTGCTGA-TGTTAATAAAGAAATAGA J170_Green_locus2_SN -------------------------------------------------- J258_Red_locus1_SN -------------------------------------------------- J238_Green_locus2_SN -------------------------------------------------- J254_Red_locus1_NK -------------------------------------------------- J254_Green_locus2_SN GCCTTTTGCTCGTTCAAAAAATATTTGCTGA-TGTCAATAAAGAAATAAA J166_Green_locus1_SN GCCTTTTGTTCATTCAAAAAATATTTGCTGA-TATTAATAAAGAAATAAA J99_Green_locus2_SN GCCTTTTGCTCGTTCAAAAAATATTTGCTGA-TGTTAGTAAAGAAATAAA J166_Green_locus2_KD GCCTTTTGTTCGTTCAAAAAATATTTGCTGA-TGTTAATAAAGAAATAGA M-HP1_Green_Locus GCCTTTTGTTCGTTCAAAAAATATTTGCTGA-TGTTAGTAA------AGA J254_Red_locus2_EQ GCCTTTTGTTCGTTCAAAAAATATTTGCTGA-TGTCAATAAAGAAATAGA J99_Red_locus1_NK GCCTTTTGTTCGTTCAAAAAATATTTGCTGA-TATTAATAAAGAAATAGA J170_Red_locus1_NK -------------------------------------------------- J178_Red_locus1_NK -------------------------------------------------- J238_Red_locus1_NK -------------------------------------------------- J282_Red_locus1_NK -------------------------------------------------- M-HP1_Red_Locus TTTTGCTCGTTCAAAAAATATTTGCTGATGTTAGTAAAGAAGTAGTTGCT J166_Red_locus1_KD -------------------------------------------------- J166_Red_locus2_KD GTTGCTAATACTGAAAAGAAAGCAGAAAAAGCGGGTTATGGTTATAGTAA J258_Green_locus2_SN -------------------------------------------------- J282_Red_locus2_EQ -------------------------------------------------- J178_Red_locus2_EQ -------------------------------------------------- 26695_Red_locus1_SN AGCAGTTGCTAATACTGAAAAGAAAGCAGAAAAAGCGGGTTATGGTTATA 26695_Red_locus2_SN AGTAGTTGCTAATACTGAAAAGAAAGCAGAAAAAGCGGGTTATGGTTATA 26695_Red_locus2_NK AGCAGTTGCTAATACTGAAAAGAAAGCAGAAAAAGCGGGTTATGGTTATA 26695_Green_locus1_SN AGCAGTTGCTAATACTGAAAAGAAAGCAGAAAAAGCGGGTTATGGTTATA 26695_Red_locus1_NK AGCAGTTGCTAATACTGAAAAGAAAGCAGAAAAAGCGGGTTATGGTTATA J170_Green_locus2_SN -------------------------------------------------- J258_Red_locus1_SN -------------------------------------------------- J238_Green_locus2_SN -------------------------------------------------- J254_Red_locus1_NK -------------------------------------------------- J254_Green_locus2_SN AGCAGTTGCTAATACCGAGAAAAAAGTAGAAAAAGCGGGTTATGGTTATA J166_Green_locus1_SN AGTAGTTGCTAATACCGAGAAAAAAGTAGAAAAAGCGGGTTATGGTTATA J99_Green_locus2_SN AGTAGTTGCTAATACCGAGAAAAAAGTAGAAAAAGCGGGTTATGGTTATA J166_Green_locus2_KD AGTAGTTGCTAATACTGAAAAGAAAGCAGAAAAAGTGGGTTATGGTTATA M-HP1_Green_Locus AGTAGTTGCTAATACCGAGAAAAAAGTAGAAAAAGCGGGTTATGGTTATA J254_Red_locus2_EQ AGCAGCTGCTAATACCGATAAAAAAGTAGAAAAAGCGGGTTATGGTTATA J99_Red_locus1_NK AGCAGTTGCTAATACTGAAAAGAAAACAGAAAAAGCGGGTTATGGTTATA J170_Red_locus1_NK -------------------------------------------------- J178_Red_locus1_NK -------------------------------------------------- J238_Red_locus1_NK -------------------------------------------------- J282_Red_locus1_NK -------------------------------------------------- M-HP1_Red_Locus AATACCGAGAAAAAAGTAGAAAAAGCGGGTTATGGTTATAGTAAAAGGAT J166_Red_locus1_KD -------------- J166_Red_locus2_KD AAGGATGTAG---- J258_Green_locus2_SN -------------- J282_Red_locus2_EQ -------------- J178_Red_locus2_EQ -------------- 26695_Red_locus1_SN GTAAAAGGATGTAG 26695_Red_locus2_SN GTAAAAGGATGTAG 26695_Red_locus2_NK GTAAAAGGATGTA- 26695_Green_locus1_SN GTAAAAGGATGTAG 26695_Red_locus1_NK GTAAAAGGATGTAG J170_Green_locus2_SN -------------- J258_Red_locus1_SN -------------- J238_Green_locus2_SN -------------- J254_Red_locus1_NK -------------- J254_Green_locus2_SN GTAAAAGGATGTAG J166_Green_locus1_SN GTAAAAGGGTGTAG J99_Green_locus2_SN GTAAAAGGATGTAG J166_Green_locus2_KD GTAAAAGGATGTAG M-HP1_Green_Locus GTAAAAGGGTGTAG J254_Red_locus2_EQ GTAAAAGGATGTAG J99_Red_locus1_NK GTAAAAGGATGTAG J170_Red_locus1_NK -------------- J178_Red_locus1_NK -------------- J238_Red_locus1_NK -------------- J282_Red_locus1_NK -------------- M-HP1_Red_Locus GTAG----------