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/home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/founder_allele_and_cons_dna.meg
#Mega Title: founder_allele_and_cons_dna.aln #J99_Red_locus1_NK ATGGAATCAGTAAAAACAGTAAAAACAAATAAAGTTGGCAAAAACACAGA GACAGCTAACACAGAGGCAAGTAAAGAGACTCATTTTAAACAAGCGAGTG CCATTACAAATACGCTCCGATCAATTGGTGGGATTTTTACAAAAATTGCA AAGAAAGTTAGAGAACTTGTGA--AAAAACATCCCAAGAAAAGCAGTGTG GCATTAGTAGTATTGACCCATATTGCGTGCAAGAGGGCAAAAGAATTGGA CGATAAAGTCCAAGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCA ATTGGTGGAAATATT--CAGGATTAACAATAGCGGCAAGTTTATTATTAG CCGCTTGTAGCACTGGTGATATTGATAAACAAATAGAACTAGAACAAAAT TGCCAAGAAAAACATGGCCAATTGTTTATTAAAAAAGCAAGAATTAAGAC CGGTATTACTACTGGTATTGCCATAGAAATAGAAGCTGAATGCAAAACCC CTAAACCTGCAAAAACCAATCAAACCCCTATCCAGCCAAAACACCTCCCA AACTCTAAACAACCCCGCTCTCAAAGAGGATCAAAAGCGCAAGAGCTTAT CGCTTATTTGCAAAAAGAGCTAGAATCTCTGCCCTATTCGCAAAAAGCTA TCGCTAAACAAGTGGATTTTTATAAACCAAGTTCTATCGCTTATTTAGAA CTAGACCCTAGAGATTTTAAGGTTACAGAAGAATGGCAAAAAGAAAATTT AAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-AAATGAGAA----- -------ACCCACAAGCCCACCTTCCAACCTCTCAAAGCCTTTTGTTCGT TCAAAAAATATTTGCTGA-TATTAATAAAGAAATAGAAGCAGTTGCTAAT ACTGAAAAGAAAACAGAAAAAGCGGGTTATGGTTATAGTAAAAGGATGTA G #26695_Red_locus2_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACGCAGA GACAS-TAACGCAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAATG CCATTACAAATATAATCAGATCAGTTGGTGGGTTTTTTACAAAGATTATG AAGAGAGTTAGAGAACTTGTAA--AAAAACATCCCGAGAAAAGCAGTGTG GCATTAGTAGTATTAACCCATGCTGCATGCAAGAAAGCGAAAGAATTGGA CGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCA ATTGGTGGAAATATT--CAGGATTAACAATAGCGACAAGTTTATTATTAG CCGCTTGTAGTGTTGGTGATATTGATAAACAGATAGAGTTAGAACAAAAT TGCCAAGAAAATCATGGCCAATTCTTTATGAAAAAATTAGGAATTAAGGG ------------TGGCATTGCTATAGAAGTAGAAGCTGAATGCAAAACCC CTAAACCTGCAAAAACCAATCAAACCCCTATCCAGCCAAAACACCTCCCC AACTCTAAACAACCCCACTCTCAAAGAGGATCAAAAGCGCAAGAGCTTAT CGCTTATTTGCAAAAAGAGTTAGAATCTCTGCCCTATTCACAAAAAGCTA TCGCTAAACAAGTGAATTTTTACAGGCCAAGTTCTGTCGCTTATTTAGAA CTAGACCCTAGAGATTTTAAGGTTACAGAAGAATGGCAAAAAGAAAATCT AAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTGGAAATGAGAA----- -------ACCCACAAGCCCACCTTTCAACCTCTCAAAGCCTTTTGTTCGT TCAAAAAATATTTGCTGAATGTTAATAAAGAAATAGAAGCAGTTGCTAAT ACTGAAAAGAAAGCAGAAAAAGCGGGTTATGGTTATAGTAAAAGGATGTA - #26695_Red_locus1_SN ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAATACAGA GATGGCTAATACAAAGGCAAATAAAGAGRCTCATTTTAAACAAGYGAGCA CCATTACAAATATAATCAGATCARTTSGTGGGATTTTTACAAAAATTGCA AAGAAAGTTAGAGGACTTGTAA--AAAAACACCCCAAGAAAAGCAGTGCG GCATTAGTAGTATTGACCCATATTGCGTGCAAGAAAGCGAAAGAATTAGA CGATAAAGTCCAAGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCA ATTGGTGGAAATATT--CAGGATTAACAATAGCGACAAGTTTATTATTAG CCGCTTGTAGCACTGGTGATGTTAGTGAACAAATAGAACTAGAACAAAAT TGCCAAGAAAATCATAATCAATTCTTTATTGAAAAAGGAGGAATTAAGGC ------------TGGTATTGGTATAGAAGTAGAAGCTGAATGCAAAACCC CTAAACCTGCAAAAACCAATCAAACCCCTATCCAGCCAAAACACCTCCCA AACTCTAAACAACCCCGCTCTCAAAGAGGATCAAAAGCGCAAGAGCTTAT CGCTTATTTGCAAAAAGAGCTAGAATTTCTGCCCTATTCGCAAAAAGCTA TCGCTAAACAAGTGGATTTTTACAGGCCAAGTTCTATCGCTTATTTAGAA CTAGATCCTAGAGATTTTAAGGTTACAGAAGAATGGCAAAAAGAAAATCT AAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-AAATGAGAA----- -------ACCCACAAGCCCACCTTTCAAACTCTCAAAGCCTTTTGTTCGT TCAAAAAATATTTGCTGA-TGTTAATAAAGAAATAGAAGCAGTTGCTAAT ACTGAAAAGAAAGCAGAAAAAGCGGGTTATGGTTATAGTAAAAGGATGTA G #26695_Red_locus2_SN ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAATACAGA GATGGCTAATACAAAGGCAAATAAAGAGGCTCATTTTAAACAAGCGAGCA CCATTACAAATATAATCAGATCAATTCGTGGGATTTTTACAAAAATTGCA AAGAAAGTTAGAGGACTTGTAA--AAAAACACCCCAAGAAAAGCAGTGCG GCATTAGTAGTATTGACCCATATTGCGTGCAAGAAAGCGAAAGAATTAGA CGATAAAGTCCAAGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCA ATTGGTGGAAATATT--CAGGATTAACAATAGCGACAAGTTTATTATTAG CCGCTTGTAGCACTGGTGATGTTAGTGAACAAATAGAACTAGAACAAAAT TGCCAAGAAAATCATAATCAATTCTTTATTGAAAAAGGAGGAATTAAGGC ------------TGGTATTGGTATAGAAGTAGAAGCTGAATGCAAAACCC CTAAACCTGCAAAAACCAATCAAACCCCTATCCAGCCAAAACACCTCCCA AACTCTAAACAACCCCGCTCTCAAAGAGGATCAAAAGCGCAAGAGCTTAT CGCTTATTTGCAAAAAGAGCTAGAATCTCTGCCCTATTCACAAAAAGCTA TCGCTAAACAAGTGGATTTTTATAGACCAAGTTCTATCGCTTATTTAGAA CTAGACCCTAGAGATTTTAATGTTACAGAAGAATGGCAAAAAGAAAATTT AAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-AAATGAGGAGTTTA AAACCAGACTCACAAGCCCACCTTTCAACCTCTCAAAGCCTTTTGTTCGT TCAAAAAATATTTGCTGA-TGTTAATAAAGAAATAAAAGTAGTTGCTAAT ACTGAAAAGAAAGCAGAAAAAGCGGGTTATGGTTATAGTAAAAGGATGTA G #26695_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAATACAGA GATGGCTAATACAAAGGCAAATAAAGAGACTCATTTTAAACAAGTGAGCG CCATTACAAATATAATCAGATCAGTTGGTGGGTTTTTTACAAAAATTGCA AAGAGAGTTAGAGGACTTGTAA--AAAAACACCCCAAGAAAAGCAGTGCG GCATTAGTAGTATTGACCCATATTGCGTGCAAGAAAGCGAAAGAATTAGA CGATAAAGTCCAAGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCA ATTGGTGGAAATATT--CAGGATTAACAATAGCGGCAAGTTTATTATTAG CCGCTTGTAGCGCTGGTGATACTGATAAACAGATAGAACTAGAACAAAAT TGCCAAGAAAATCATAATCAATTCTTTATTAAAAAATTAGGAATTAAGGG ------------TGGCATTGCTATAGAAGTAGAAGCTGAATGCAAAACCC CTAAACCTGCAAAAACCAATCAAACCCCTATCCAGCCAAAACACCTCCCA AACTCTAAACAACCTCATTCTCAAAGAGGATCAAAAGCGCAAGAGTTTAT CGCTTATTTGCAAAAAGAGCTAGAATTTCTGCCCTATTCGCAAAAAGCTA TCGCTAAACAAGTGAATTTCTATAAACCAAGTTCTATCGCTTATTTAGAA CTAGATCCTAGAGATTTTAAGGTTACAGAAGAATGGCAAAAAGAAAATCT AAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-AAATGAGGGATTTA AAACCAGACCCACAAGCCCACCTTCCAACCTCTCAAAGCCTTTTGTTCGT TCAAAAAATATTTGCTGA-TGTTAATAAAGAAATAGAAGCAGTTGCTAAT ACTGAAAAGAAAGCAGAAAAAGCGGGTTATGGTTATAGTAAAAGGATGTA G #J99_Green_locus2_SN -------------------------------------------------- --------------ATGCCTGTTATAAGA---GTTTTAGTAATGCTTGCA ACAATGATGATGAAATTAGTAAAAACGGCAAAAGA--AAAGAAAGTTTTT AAGAATGTGGGAATATCTATAATGGGGATTGCTTTTTGGGAAGCGATAAA AGACT--CGATAAAAAAACAAATTA-----AAAAAAGCGATTGGAT-ATG CGGGAATGTTAAGACTGCGGATGATTA--TTTAAAAACGCATCCTAACTC ATGGTTTAATTCAGCAATAGGTGTAACAGCGATAACAGCCATGCTTATGA ATGTGTGTTTTGCTGATGA--CCAATCCAAAAA-AGAAGTGGAACAAAAT TGCCAAGAAAATCATAATCAATTCTTTATTAAAAAATTAGGAATTAAGGC ------------TGGCATTGCTATAGAAATAGAAGCTGAATGCAAAACCC CTAAACCCACAAAAACCAATCAAACCCCTATCCAGCCAAAACACCTCCCA AACTCCAAACAACCCCATTCTCAAAGAGGATCAAAAGCGCAAGAGCTTAT CGCTTATTTGCAAAAAGAGCTAGAATCTCTGCCCTATTCACAAAAAGCTA TCGCTAAACAAGTGGATTTTTATAGGCCAAGTTCTATCGCTTATTTAGAA CTAGATCCTAGAGATTTTAACGCTACAGAAGAATGGCAAAAAGAAAATTT AAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-AAATGAGGAGTTTA AAACCAGACCCACAAGCCCACCTTTCAACCTCTCAAAGCCTTTTGCTCGT TCAAAAAATATTTGCTGA-TGTTAGTAAAGAAATAAAAGTAGTTGCTAAT ACCGAGAAAAAAGTAGAAAAAGCGGGTTATGGTTATAGTAAAAGGATGTA G #26695_Green_locus1_SN -------------------------------------------------- --------------ATGCCTGTTATAAGA---GTTTTAGTAATGCTTGCA ACAATGATGATGAAATTAGTAAAAACGGCAAAAGA--AAAGAAAGTTTTT AAGAATGTGGGAATGTCTATAATGGGGATTGCTTTTTGGGAGGCGATAAA AGACT--CAATAAAAAAACAAATTA-----AAAAAAGCAATTGGAT-ATG CGGGAATGTTAAGACTGCGGATGATTA--TTTAAAAACGCATCCTAACTC ATGGTTTAATTCAGCAATAGGTGTAACAACGATAACAGCCATGCTTATGA ATGTGTGTTTTGCTGATGA--CCAATCCAAAAA-AGAAGTGGAACAAAAT TGCCAAGAAAATCATAATCAATTCTTTATTAAAAAATTAGGAATTAAGGG ------------TGGCATTGCTATAGAAGTAGAAGCTGAATGCAAAACCC CTAAACCTGCAAAAACCAATCAAACCCCTATCCAGCCAAAACACCTCCCA AACTCTAAACAACCTCATTCTCAAAGAGGATCAAAAGCGCAAGAGTTTAT CGCTTATTTGCAAAAAGAGCTAGAATTTCTGCCCTATTCGCAAAAAGCTA TCGCTAAACAAGTGAATTTCTATAAACCAAGTTCTATCGCTTATTTAGAA CTAGATCCTAGAGATTTTAAGGTTACAGAAGAATGGCAAAAAGAAAATCT AAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTG-AAATGAGGGATTTA AAACCAGACCCACAAGCCCACCTTCCAACCTCTCAAAGCCTTTTGTTCGT TCAAAAAATATTTGCTGA-TGTTAATAAAGAAATAGAAGCAGTTGCTAAT ACTGAAAAGAAAGCAGAAAAAGCGGGTTATGGTTATAGTAAAAGGATGTA G