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/home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/founder_monkey_l1_red_rdgene.dnd
( ( ( ( ( ( ( ( ( ( J166_Green_locus1_SN:0.05187, J254_Green_locus2_SN:0.06661) :0.08451, ( ( J166_Red_locus2_KD:0.08627, J254_Red_locus2_EQ:0.01772) :0.03837, J166_Green_locus2_KD:0.25448) :0.04609) :0.13548, ( J170_Green_locus2_SN:0.03293, ( J238_Green_locus2_SN:0.03446, J258_Green_locus2_SN:0.03123) :0.11318) :0.12710) :0.26216, ( ( ( ( J166_Red_locus1_KD:0.01814, J282_Red_locus2_EQ:0.06222) :0.03390, J178_Red_locus2_EQ:0.00580) :0.07188, J254_Red_locus1_NK:-0.00859) :0.02782, J258_Red_locus1_SN:0.08497) :0.00367) :0.03825, ( ( ( 98-149_Red_locus1_NK:0.00310, 98-152_Red_locus1_NK:0.00704) :0.00169, 98-150_red_locus1_NK:0.00195) :0.00152, 98-151_Red_locus1_NK:0.00490) :0.01068) :0.01280, ( ( ( J170_Red_locus1_NK:-0.00044, J178_Red_locus1_NK:0.02855) :0.00253, J238_Red_locus1_NK:0.03320) :0.01286, J282_Red_locus1_NK:0.02526) :0.01347) :0.01087, 98-182_Red_locus1_NK:0.00228) :0.00180, 98-208_Red_locus1_NK:-0.00042) :0.00194, 98-147_Red_locus1_NK:0.00000) :0.00092, ( ( 98-169_Red_locus1_NK:0.00076, 98-170_Red_locus1_NK:0.00181) :0.00067, ( 98-180_Red_locus1_NK:0.00650, ( 98-210_Red_locus1_NK:0.00647, 98-212_Red_locus1_NK:0.00000) :0.00319) :0.00092) :0.00014, 98-171_Red_locus1_NK:0.00099);