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/home/cluster1/data/bu01/1121861/jlex/alignment/alignments/26695_j99-red_alleles.aln
CLUSTAL W (1.83) multiple sequence alignment 26695-L1-1/3-Red-SN ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAATACAGAGATGGCTAAT 26695-L2-1/2-Red-SN ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAATACAGAGATGGCTAAT 26695-L1-3/3-Red-NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAATACAGAGATGGCTAAT J99-L1-1/1-Red-NK ATGGAATCAGTAAAAACAGTAAAAACAAATAAAGTTGGCAAAAACACAGAGACAGCTAAC 26695-L2-2/2-Red-NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACGCAGAGACAS-TAAC ******************* ************ ******** ** ****** *** 26695-L1-1/3-Red-SN ACAAAGGCAAATAAAGAGRCTCATTTTAAACAAGYGAGCACCATTACAAATATAATCAGA 26695-L2-1/2-Red-SN ACAAAGGCAAATAAAGAGGCTCATTTTAAACAAGCGAGCACCATTACAAATATAATCAGA 26695-L1-3/3-Red-NK ACAAAGGCAAATAAAGAGACTCATTTTAAACAAGTGAGCGCCATTACAAATATAATCAGA J99-L1-1/1-Red-NK ACAGAGGCAAGTAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATACGCTCCGA 26695-L2-2/2-Red-NK GCAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAATGCCATTACAAATATAATCAGA ** ****** ******* *************** ** ************ ** ** 26695-L1-1/3-Red-SN TCARTTSGTGGGATTTTTACAAAAATTGCAAAGAAAGTTAGAGGACTTGTAAAAAAACAC 26695-L2-1/2-Red-SN TCAATTCGTGGGATTTTTACAAAAATTGCAAAGAAAGTTAGAGGACTTGTAAAAAAACAC 26695-L1-3/3-Red-NK TCAGTTGGTGGGTTTTTTACAAAAATTGCAAAGAGAGTTAGAGGACTTGTAAAAAAACAC J99-L1-1/1-Red-NK TCAATTGGTGGGATTTTTACAAAAATTGCAAAGAAAGTTAGAGAACTTGTGAAAAAACAT 26695-L2-2/2-Red-NK TCAGTTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAT *** ** ***** ********** *** **** ******** ****** ******** 26695-L1-1/3-Red-SN CCCAAGAAAAGCAGTGCGGCATTAGTAGTATTGACCCATATTGCGTGCAAGAAAGCGAAA 26695-L2-1/2-Red-SN CCCAAGAAAAGCAGTGCGGCATTAGTAGTATTGACCCATATTGCGTGCAAGAAAGCGAAA 26695-L1-3/3-Red-NK CCCAAGAAAAGCAGTGCGGCATTAGTAGTATTGACCCATATTGCGTGCAAGAAAGCGAAA J99-L1-1/1-Red-NK CCCAAGAAAAGCAGTGTGGCATTAGTAGTATTGACCCATATTGCGTGCAAGAGGGCAAAA 26695-L2-2/2-Red-NK CCCGAGAAAAGCAGTGTGGCATTAGTAGTATTAACCCATGCTGCATGCAAGAAAGCGAAA *** ************ *************** ****** *** ******* ** *** 26695-L1-1/3-Red-SN GAATTAGACGATAAAGTCCAAGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 26695-L2-1/2-Red-SN GAATTAGACGATAAAGTCCAAGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 26695-L1-3/3-Red-NK GAATTAGACGATAAAGTCCAAGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT J99-L1-1/1-Red-NK GAATTGGACGATAAAGTCCAAGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 26695-L2-2/2-Red-NK GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT ***** ************** *************************************** 26695-L1-1/3-Red-SN TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGCACT 26695-L2-1/2-Red-SN TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGCACT 26695-L1-3/3-Red-NK TGGTGGAAATATTCAGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAGCGCT J99-L1-1/1-Red-NK TGGTGGAAATATTCAGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAGCACT 26695-L2-2/2-Red-NK TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT ****************************** ************************* * 26695-L1-1/3-Red-SN GGTGATGTTAGTGAACAAATAGAACTA 26695-L2-1/2-Red-SN GGTGATGTTAGTGAACAAATAGAACTA 26695-L1-3/3-Red-NK GGTGATACTGATAAACAGATAGAACTA J99-L1-1/1-Red-NK GGTGATATTGATAAACAAATAGAACTA 26695-L2-2/2-Red-NK GGTGATATTGATAAACAGATAGAGTTA ****** * * **** ***** **