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//home/cluster1/data/bu01/1121861/jlex/rdloci/vregions/vregions.xml
<?xml version="1.0" encoding="iso-8859-1"?> <vregions> <!--***************************** J170 **************************************** --> <vregion> <strain>J170</strain> <locus>Locus2</locus> <allele>Green</allele> <AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEQQKT EQEKQKT NNTQ KDLIKKA</AA_sequence> </vregion> <vregion> <strain>J170</strain> <locus>Locus1</locus> <allele>Red</allele> <AA_sequence>* * * EQEKQKT EQEQQKT EQERQKA NKSGIEL EQERRKT NKSEIEL ANSQIKV * EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence> </vregion> <!--***************************** J178 **************************************** --> <vregion> <strain>J178</strain> <locus>locus1</locus> <allele>Red</allele> <AA_sequence>* * EQEKQKA NKSGIEL EQERQKT EQERQKT NKSEIEL EQERRKT NKSEIEL ANSQIKV * EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence> </vregion> <vregion> <strain>J178</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * EQEHQKT EQERQKT EQERQKT EQEKQKT INTQ KDFIKYV</AA_sequence> </vregion> <!--***************************** J230 **************************************** --> <vregion> <strain>J230</strain> <locus>locus1</locus> <allele>Red</allele> <AA_sequence>* * EQEKQKT EQEQQKT EQERQKA NKSGIEL EQERQKT EQERRKT NKSEIEL ANSQIKV * EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence> </vregion> <vregion> <strain>J230</strain> <locus>locus2</locus> <allele>Green</allele> <AA_sequence>* * * * * * EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEQQKT EQEKQKT NNTQ KDLIKKA</AA_sequence> </vregion> <!--***************************** J254 **************************************** --> <vregion> <strain>J254</strain><locus>locus2</locus> <allele>Green</allele> <AA_sequence>* * * EQEQQKT EQEQQKT EQEQQKT EQEKQKT EQEKQKT EQEKQKT EQEKQKT EQEKQKT SNIETNNQIKV EQEQQKT EQEKQKT NNTQ KDLINKA</AA_sequence> </vregion> <vregion> <strain>J254</strain> <locus>locus1</locus> <allele>Red</allele> <AA_sequence>* * * * EQEKKEA NKSGIEL EQERQKT EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT NNTQ KDLINKA</AA_sequence> </vregion> <vregion> <strain>J254</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * * EQEKQKT INTQ KDFIKET</AA_sequence> </vregion> <!-- ***************************** J258 **************************************** --> <vregion> <strain>J258</strain> <locus>locus1</locus> <allele>Red</allele> <AA_sequence>* * * * * * EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNVETNNQIKV EQEQQKT * SNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <vregion> <strain>J258</strain> <locus>locus2</locus> <allele>Green</allele> <AA_sequence>* * * * * * EQEKQKT EQEQQKT EQEQQKT EQEKQKT EQEKQKT SNIETNNKIRV EQEQQKT EQEKQKT INTQ KDFIKYV</AA_sequence> </vregion> <!--***************************** J282 **************************************** --> <vregion> <strain>J282</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * EQEQQKT EQEKQKT INTQ KDFIKYA</AA_sequence> </vregion> <vregion> <strain>J282</strain> <locus>locus1</locus> <allele>Red</allele> <AA_sequence>* * * EQEKQKT EQEQQKT EQERQKA NKSGIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence> </vregion> <!--***************************** J166 **************************************** --> <vregion> <strain>J166</strain> <locus>locus1</locus> <allele>Green</allele> <AA_sequence>* * * * * * * * EQEQQKT SNIETNNQIKV EQEKQKT NNIETNNQIKV EQEQQKT * NNTQ KDLIKKA</AA_sequence> </vregion> <vregion> <strain>J166</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <vregion> <strain>J166</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <!--***************************** 98-147 **************************************** --> <vregion> <strain>98-147</strain> <locus>locus1</locus> <allele>Green</allele> <AA_sequence>* * EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT * NNTQ KDLVNKA</AA_sequence> </vregion> <vregion> <strain>98-147</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDSLNT?</AA_sequence> </vregion> <vregion> <strain>98-147</strain> <locus>locus1</locus> <allele>Red</allele> <AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence> </vregion> <!--***************************** 98-149 **************************************** --> <vregion> <strain>98-149</strain> <allele>Green</allele> <locus>locus1</locus> <AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEQQKT EQEKQKT NNTQ KDLVNKA</AA_sequence> </vregion> <vregion> <strain>98-149</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <vregion> <strain>98-149</strain> <locus>locus1</locus> <allele>Red</allele> <AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <!--***************************** 98-150 **************************************** --> <vregion> <strain>98-150</strain> <locus>locus1</locus> <allele>Green</allele> <AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEQQKT EQEKQKT NNTQ KDLVNKA</AA_sequence> </vregion> <vregion> <strain>98-150</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * EQEQQKT EQEKQKT INTQ KDFIKYA</AA_sequence> </vregion> <vregion> <strain>98-150</strain> <locus>locus1</locus> <allele>red</allele> <AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <!--***************************** 98-151 **************************************** --> <vregion> <strain>98-151</strain> <locus>locus1</locus> <allele>Green</allele> <AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEQQKT DHEKPKT NITL KDLVNKA</AA_sequence> </vregion> <vregion> <strain>98-151</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <vregion> <strain>98-151</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQE?QKA NKSEIEL EQQKQKT INTQ RDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <!--***************************** 98-152 **************************************** --> <vregion> <strain>98-152</strain> <locus>locus1</locus> <allele>Green</allele> <AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEQQKT EQEKQKT NNTQ KDLVNKA</AA_sequence> </vregion> <vregion> <strain>98-152</strain> <locus>locus1</locus> <allele>Red</allele> <AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <vregion> <strain>98-152</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <!--***************************** 98-169 **************************************** --> <vregion> <strain>98-169</strain> <locus>locus1</locus> <allele>Green</allele> <AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT NNTQ KDLVNKA</AA_sequence> </vregion> <vregion> <strain>98-169</strain> <locus>locus1</locus> <allele>Red</allele> <AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence> </vregion> <vregion> <strain>98-169</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <!--***************************** 98-170 **************************************** --> <vregion> <strain>98-170</strain> <locus>locus1</locus> <allele>Green</allele> <AA_sequence>* * EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV ELEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT * NNTQ KDLVNKA</AA_sequence> </vregion> <vregion> <strain>98-170</strain> <locus>locus1</locus> <allele>Red</allele> <AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFLKET</AA_sequence> </vregion> <vregion> <strain>98-170</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <!--***************************** 98-171 **************************************** --> <vregion> <strain>98-171</strain> <locus>locus1</locus> <allele>Green</allele> <AA_sequence> * * EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT * NNTQ KDLVNKA</AA_sequence> </vregion> <vregion> <strain>98-171</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <!--***************************** 98-180 **************************************** --> <vregion> <strain>98-180</strain> <locus>locus1</locus> <allele>Green</allele> <AA_sequence>* * EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT * NNTQ KDLVNKA</AA_sequence> </vregion> <vregion> <strain>98-180</strain> <locus>locus1</locus> <allele>Red</allele> <AA_sequence>EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence> </vregion> <vregion> <strain>98-180</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <!--***************************** 98-182 **************************************** --> <vregion> <strain>98-182</strain> <locus>locus1</locus> <allele>Green</allele> <AA_sequence>* * EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT * NNTQ KDLVNKA</AA_sequence> </vregion> <vregion> <strain>98-182</strain> <locus>locus1</locus> <allele>Red</allele> <AA_sequence>EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence> </vregion> <vregion> <strain>98-182</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <!--**************************************** 98-208 **************************************** --> <vregion> <strain>98-208</strain> <locus>locus1</locus> <allele>Green</allele> <AA_sequence>* * EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNMETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT * NNTQ KDLVNKA</AA_sequence> </vregion> <vregion> <strain>98-208</strain> <locus>locus1</locus> <allele>Red</allele> <AA_sequence>EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence> </vregion> <vregion> <strain>98-208</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <!--**************************************** 98-210 ****************************************--> <vregion> <strain>98-210</strain> <locus>locus1</locus> <allele>Green</allele> <AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKLKS NNTQ KDLVNKA</AA_sequence> </vregion> <vregion> <strain>98-210</strain> <locus>locus1</locus> <allele>Red</allele> <AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence> </vregion> <vregion> <strain>98-210</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <!-- **************************************** 98-212 ****************************************--> <vregion> <strain>98-212</strain> <locus>locus1</locus> <allele>Green</allele> <AA_sequence>EQEQQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT SNIETNNQIKV EQEKQKT NNTQ KDLVNKA</AA_sequence> </vregion> <vregion> <strain>98-212</strain> <locus>locus2</locus> <allele>Red</allele> <AA_sequence>* * * * * * * * * * * * * EQERQKA NNTQ KDLVKEQ KDLVKEQ KDLVKEQ KDFIKYA</AA_sequence> </vregion> <vregion> <strain>98-212</strain> <locus>locus1</locus> <allele>Red</allele>-Fixed <AA_sequence>* * * EQEKQKT EQEQQKT EQERQKT NKSEIEL EQERQKT NKSGIEL ANSQIKA EQERQKT EQEKQKA NKSEIEL EQQKQKT INTQ RDLIKEQ KDFIKET</AA_sequence> </vregion> </vregions>