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//home/cluster1/data/bu01/1121861/jlex/rdloci/rdloci_search.html
<HTML> <HEAD> <meta http-equiv="Content-Type" content="text/html; charset=utf-8"> <TITLE>H. pylori Database</TITLE> <META HTTP-EQUIV="Content-Type" CONTENT="text/html; charset=iso-8859-1"> </HEAD> <BODY BGCOLOR="#FFFFFF" TEXT="#000000"> <CENTER> <HR ALIGN="center" WIDTH="100%" SIZE="2" COLOR="#800000"> <H1>RD Gene Database</H1> <FORM METHOD="post" action="../../php5/query_result.php5"><INPUT TYPE="hidden" NAME="project" value="rdloci"><BR><BR><TABLE BORDER="1" WIDTH="600"> <TR> <TH>Field</TH> <TH>Logical operator</TH> <TH>String</TH> </TR> <tr> <td><select name="phrases_and_fields_0"> <option value="Strain">Strain</option> <option value="Strain Type">Strain Type</option> <option value="Geographic Origin">Geographic Origin</option> <option value="Locus">Locus</option> <option value="Allele">Allele</option> <option value="AA Variable Region">AA Variable Region</option> <option value="DNA Variable Region">DNA Variable Region</option> <option value="Variable Region Type">Variable Region Type</option> <option value="Allele Sequence">Allele Sequence</option> <option value="Conserved Sequence">Conserved Sequence</option></select></td> <td><select name="reg_exps_0"> <option value="contains sequence">contains sequence</option> <option value="does not contain sequence">does not contain sequence</option> <option value="begins with">begins with</option> <option value="does not begin with">does not begin with</option> <option value="ends with">ends with</option> <option value="does not end with">does not end with</option> <option value="equals">equals</option> <option value="does not equal">does not equal</option> <option value="empty">empty</option> <option value="not empty">not empty</option> <option value="contains word">contains word</option> <option value="does not contain word">does not contain word</option> <option value="regular expression">regular expression</option></select></td> <td><input type="text" size="20" name="string_0"></td> </tr> <tr> <td colspan="4" align="center"><select name="connectives_0"> <option value="AND">AND</option> <option value="OR">OR</option></select></td> </tr> <tr> <td><select name="phrases_and_fields_1"> <option value="Strain">Strain</option> <option value="Strain Type">Strain Type</option> <option value="Geographic Origin">Geographic Origin</option> <option value="Locus">Locus</option> <option value="Allele">Allele</option> <option value="AA Variable Region">AA Variable Region</option> <option value="DNA Variable Region">DNA Variable Region</option> <option value="Variable Region Type">Variable Region Type</option> <option value="Allele Sequence">Allele Sequence</option> <option value="Conserved Sequence">Conserved Sequence</option></select></td> <td><select name="reg_exps_1"> <option value="contains sequence">contains sequence</option> <option value="does not contain sequence">does not contain sequence</option> <option value="begins with">begins with</option> <option value="does not begin with">does not begin with</option> <option value="ends with">ends with</option> <option value="does not end with">does not end with</option> <option value="equals">equals</option> <option value="does not equal">does not equal</option> <option value="empty">empty</option> <option value="not empty">not empty</option> <option value="contains word">contains word</option> <option value="does not contain word">does not contain word</option> <option value="regular expression">regular expression</option></select></td> <td><input type="text" size="20" name="string_1"></td> </tr> <tr> <td colspan="4" align="center"><select name="connectives_1"> <option value="AND">AND</option> <option value="OR">OR</option></select></td> </tr> <tr> <td><select name="phrases_and_fields_2"> <option value="Strain">Strain</option> <option value="Strain Type">Strain Type</option> <option value="Geographic Origin">Geographic Origin</option> <option value="Locus">Locus</option> <option value="Allele">Allele</option> <option value="AA Variable Region">AA Variable Region</option> <option value="DNA Variable Region">DNA Variable Region</option> <option value="Variable Region Type">Variable Region Type</option> <option value="Allele Sequence">Allele Sequence</option> <option value="Conserved Sequence">Conserved Sequence</option></select></td> <td><select name="reg_exps_2"> <option value="contains sequence">contains sequence</option> <option value="does not contain sequence">does not contain sequence</option> <option value="begins with">begins with</option> <option value="does not begin with">does not begin with</option> <option value="ends with">ends with</option> <option value="does not end with">does not end with</option> <option value="equals">equals</option> <option value="does not equal">does not equal</option> <option value="empty">empty</option> <option value="not empty">not empty</option> <option value="contains word">contains word</option> <option value="does not contain word">does not contain word</option> <option value="regular expression">regular expression</option></select></td> <td><input type="text" size="20" name="string_2"></td> </tr> <tr> <td colspan="4" align="center"><select name="connectives_2"> <option value="AND">AND</option> <option value="OR">OR</option></select></td> </tr> <tr> <td><select name="phrases_and_fields_3"> <option value="Strain">Strain</option> <option value="Strain Type">Strain Type</option> <option value="Geographic Origin">Geographic Origin</option> <option value="Locus">Locus</option> <option value="Allele">Allele</option> <option value="AA Variable Region">AA Variable Region</option> <option value="DNA Variable Region">DNA Variable Region</option> <option value="Variable Region Type">Variable Region Type</option> <option value="Allele Sequence">Allele Sequence</option> <option value="Conserved Sequence">Conserved Sequence</option></select></td> <td><select name="reg_exps_3"> <option value="contains sequence">contains sequence</option> <option value="does not contain sequence">does not contain sequence</option> <option value="begins with">begins with</option> <option value="does not begin with">does not begin with</option> <option value="ends with">ends with</option> <option value="does not end with">does not end with</option> <option value="equals">equals</option> <option value="does not equal">does not equal</option> <option value="empty">empty</option> <option value="not empty">not empty</option> <option value="contains word">contains word</option> <option value="does not contain word">does not contain word</option> <option value="regular expression">regular expression</option></select></td> <td><input type="text" size="20" name="string_3"></td> </tr> <TR> <TD COLSPAN="4" ALIGN="CENTER"><b>Stylesheet: </b><SELECT name="stylesheet"> <OPTION value="../rdloci/allele_to_html.xsl">Align Alleles</OPTION> <OPTION value="../rdloci/conserved_to_html.xsl">Align Conserved Region</OPTION> <OPTION value="../rdloci/allele_and_cons.xsl">Align Allele + Conserved Region</OPTION> <OPTION value="../rdloci/aa_to_html.xsl">Analyze Variable Region (AA)</OPTION> <OPTION value="../rdloci/dna_to_html.xsl">Analyze Variable Region (DNA)</OPTION> <OPTION value="../rdloci/aa_words.xsl">Align VRegion AA Words</OPTION> <OPTION value="../rdloci/dna_words.xsl">Align VRegionDNA Words</OPTION> <OPTION value="../rdloci/vregion_align.xsl">Align Vregions</OPTION> <OPTION value="../rdloci/align-allele_vregion_cons.xsl">Align RD Gene (Allele, Variable, and Cons)</OPTION> <OPTION value="">None</OPTION></SELECT></TD> </TR> <TR> <TD COLSPAN="4" ALIGN="CENTER"><b>Sort on: </b><INPUT TYPE="text" name="sort_order" size="25"></TD> </TR> <TR> <TD COLSPAN="4" ALIGN="center"><INPUT TYPE="submit" VALUE="Submit"><INPUT TYPE="reset" VALUE="Reset"></TD> </TR> </TABLE> </FORM><BR><BR></CENTER> </BODY> </HTML>