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//home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/pre-locus2-igrs.meg
#Mega Title: pre-locus2-igrs.aln #98-152_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --------CT-TTTATAA--GAGAGAGGTATAAAAATCATTCTTCATAA- --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGGATTCCTACTAAGAAGTTTAAAAAAGGTTCTGTT CTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAAAA-CG ATTTTATGGTGTT------TTCTTATGC- #98-18_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- -------------------------------------------------- ------------------------------AGCGGGATCCGT--AAAGGA AACTCTCTCT-TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGGATTCCTACTAAGAAGTTTAAAAAAGGTTCTGTT CTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAAAA-CG ATTTTATGGTGTT------TTCTTATGC- #98-147_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --CTCTCT---TTTATAA--GAGAGAGGTATAAAAATCATTCTTCATAA- --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGGATTCCTACTAAGAAGTTTAAAAAAGGTTCTGTT CTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAAAA-CG ATTTTATGGTGTT------TTCTTATGC- #98-210_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- -------------------------------------------------- --------------------------AGTCAGTGNGATCCGGTAAAAAGG AACTCTCTC--TTTATAA--GAGAGAGGTATAAAAATCATTCTTCATAA- --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGGATTCCTACTAAGAAGTTTAAAAAAGGTTCTGTT CTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAAAA-CG ATTTTATGGTGTT------TTCTTATGC- #98-171_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- -------------------------------------------------- ------------------------CAAGTCAGTG-GATCCCGTAAAAGGA AACTCTCTCT-TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGGATTCCTACTAAGAAGTTTAAAAAAGGTTCTGTT CTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAAAA-CG ATTTTATGGTGTT------TTCTTATGC- #98-180_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- -------------------------------------------------- ------------------------CAAGTCAGTGAGATCCGGTAAAATGA AACTCTCTCT-TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGGATTCCTACTAAGAAGTTTAAAAAAGGTTCTGTT CTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAAAA-CG ATTTTATGGTGTT------TTCTTATGC- #98-151_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------G AACTCTCTCT-TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGGATTCCTACTAAGAAGTTTAAAAAAGGTTCTGTT CTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAAAA-CG ATTTTATGGTGTT------TTCTTATGC- #98-212_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- -------------------------------------------------- ----------------------CCTAAGTCAGTGGGATACGACTAAAATG AACTCTCTCT-TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGGATTCCTACTAAGAAGTTTAAAAAAGGTTCTGTT CTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAAAA-CG ATTTTATGGTGTT------TTCTTATGC- #98-170_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- -------------------------------------------------- ------------------------CAAGTCAGTGGGATCCGC-AAAAAGA AACTCTCTC--TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGGATTCCTACTAAGAAGTTTAAAAAAGGTTCTGTT CTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAAAA-CG ATTTTATGGTGTT------TTCTTATGC- #98-208_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- -------------------------------------------------- -------------------------AAGTCAGTGGGATCCGCT--AATGA AACTCTCTCT-TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGGATTCCTACTAAGAAGTTTAAAAAAGGTTCTGTT CTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAAAA-CG ATTTTATGGTGTT------TTCTTATGC- #M-00-14_Pre-RD_RD-Red-Short_no -------------------------------------------------- -------------------------------------------------- ------------------------------------------------GA AACTCTCTC--TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGGATTCCTACTAAGAAGTTTAAAAAAGGTTCTGTT CTAATTGGGTAACATGGAGCCTTTAAAATACCATAAATAAGCTAAAA-CG ATTTTATGGTGTT------TTCTTATGC- #98-149_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- -------------------------------------------------- ---------------------------------------GACGCTAATGA AACTCTCTC--TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGGATTCCTACTAAGAAGTTTAAAAAAGGTTCTGTT CTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAAAA-CG ATTTTATGGTGTT------TTCTTATGC- #98-169_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- -------------------------------------------------- ---------------------------------------GACGCTAATGA AACTCTCTC--TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGGATTCCTACTAAGAAGTTTAAAAAAGGTTCTGTT CTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAAAA-CG ATTTTATGGTGTT------TTCTTATGC- #HP1_Pre-RD_RD-Green_non-RD_2 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -ACTCTCTCTATTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAAT AAAACAACGC-CAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGAATTCCTACTAAGGAGTTTAAAAAAGGCTCTGTT CTAATTGGGTAACATAGAGTTTTTAAAA-ACCATAAATAAGCTAAAAACG ATTTTATGGTGT--------TCTTATGC- #M-00-14_Pre-RD_RD-Green_non-RD -------------------------------------------------- -------------------------------------------------- --------------------------------------GGACGCTAAGGA AACTCTCTCT-TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAAT AAAACAACGC-CAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGAATTCCTACTAAGGAGTTTAAAAAAGGCTCTGTT CTAATTGGGTAACATAGAGTTTTTAAAATACCATAAATAAGCTAAAAACG ATTTTATGGTGT--------TCTTATGC- #M-00-12_Pre-RD_RD-Green_non-RD -------------------------------------------------- -------------------------------------------------- ----------------------------------------------AAGG AACTCTCTCT--TTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAAT AAAACAACNC-CAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGAATTCCTACTAAGGAGTTTAAAAAAGGCTCTGTT CTAATTGGGTAACATAGAGTTTTTAAAATACCATAAATAAGCTAAAAACG ATTTTATGGTGT--------TCTTATGC- #26695_Pre-RD_non-RD_RD-Red_2 TTAGAAGAGCCTTTGGAAGTCTCTGCTAAACAATTGGCTGAAATCAAAAA ACGCATGAAAAATTCGCCTAACCAACGCCCCGTCCAGCCTGACTACAACA CCGTGATCATTAAAAGCTCAGCTGAGACCCGCTAAAGATCCGCTAAATTT AAAACCCCCTCTTT-TAA--AAGAGGGAGGTAAAAATCATTCTTCATAA- --AACGCCAC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGGATTCCTACTAAGGAGTTTAAAAAAGGCTCTGTT CTAACTGGGTAACATAGAGTTTTTAAAATACTATAAATAAGCTAAGAACG ATTTTATGGTGTT------TTCTTATGC- #J99_Pre-RD_non-RD_RD-Green_2 -------------------------------------------------- -------------------------------------------------- -----------------------------------AGATCCGCTAAAATT AAAACTCTCTCTTT-TAA--AAGAGGGAGGTAAAAATCATTCTTTATAA- --AACACCGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAAATGATTAGGATTCCTACTAAGGAGTTTAAAAAAGGCTCTATT CTAATTGGGTAATATAGAGTCTTTAAAATACCATAAATAAGCTAAAAACG ATTTTATGGTGTT------TTCTTATGCC #98-150_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- -------------------------------------------------- -----------------------------------AGACCCACTAAAATG AAAACCCTCTCTTTATAA-AGAGAGGGATATAAAAATCATTCTTCATGA- --AACACCGCATAAAAATTGCAACCGCTTGTATTTTGTAAAACGCTCAAA CGCTAAAGACGATTAGGATTCCTACTAAGGAGTTTAAAAAAGGCTCTGTT CTAATTGGGTAATATAGAGTCTTTAAAATACCATAAATAAGCTAAAAACG ATTTTATGGTATTCTTATTTTCTTATGC- #J254_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- -------------------------------------------------- ----------------------------------------CGCTAAA-TG AAAACTCTCTCTTTATAATAAAGAGGGAGATAAAAATCATTCTTCATGA- --AACACCGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA CGCTAAAGACGATTGGGATTCCTACTAAGGAGTTTAAAAAAGGCTCTGTT CTAATTGGGTAATATAGAGTCTTTAAAATACCATAAATAAGCTAAAAACG ATTTTATGGTGTTCTTATTTTCTTATGC-