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/home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/j_seqs.ph
( ( ( ( ( J178_Red_locus2_EQ:0.01435, J230_Red_locus1_NK:0.02182) :0.00295[344], ( J282_Red_locus2_EQ:0.00930, J258_Red_locus1_SN:0.00879) :0.02160[973]) :0.00208[233], ( ( J99_Red_locus1_NK:0.03968, J254_Red_locus1_NK:0.01717) :0.00282[300], ( ( J166_Red_locus1_KD:0.01123, J166_Red_locus2_KD:0.02536) :0.01055[595], ( J254_Red_locus2_EQ:-0.01702, ( ( ( ( ( ( J170_Green_locus2_SN:0.00250, J258_Green_locus2_SN:0.00398) :0.01599[980], J230_Green_locus2_SN:0.00990) :0.00507[612], J99_Green_locus2_SN:0.01273) :0.00924[788], J166_Green_locus2_KD:0.03041) :0.03244[897], J254_Green_locus2_SN:-0.00979) :0.03714[927], J166_Green_locus1_SN:-0.00908) :0.41351[1000]) :0.04925[980]) :0.01073[670]) :0.00684[442]) :0.00635[522], J282_Red_locus1_NK:0.01820) :0.00247[435], J170_Red_locus1_NK:0.01630, J178_Red_locus1_NK:0.01212);