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/home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/inter_igrs.aln
CLUSTAL W (1.83) multiple sequence alignment J166_RD-Red_RD-Green_1 -------------------------------------------------- 98-170_RD-Red_RD-Green_1 -------------------------------------------------- 98-149_RD-Red_RD-Green_1 -------------------------------------------------- 26695_RD-Red_RD-Green_1 -------------------------------------------------- 26695_RD-Green_RD-Red_1 -------------------------------------------------- 26695_RD-Red_RD-Red_2 TGTTAATAAAGAAATAGAAGCAGTTGCTAATACTGAAAAGAAAGCAGAAA J254_RD-Green_RD-Red_2 -------------------------------------------------- J166_RD-Red_RD-Green_1 -------------------------------------------------- 98-170_RD-Red_RD-Green_1 --------------------------------------GCATAAGAAAAC 98-149_RD-Red_RD-Green_1 --------------------------------------GCATAAGAAAAC 26695_RD-Red_RD-Green_1 --------------------------------GCATAAGAAAATAAGAAC 26695_RD-Green_RD-Red_1 -------------------------------GGCATAAGAAAATAAGAAC 26695_RD-Red_RD-Red_2 AAGCGGGTTATGGTTATAGTAAAAGGATGTAGGCATAAGAAAATAAGAAC J254_RD-Green_RD-Red_2 --------------------------------GCATAAGAAAA------C J166_RD-Red_RD-Green_1 -------------------------------------------------- 98-170_RD-Red_RD-Green_1 ACCATAAAATCGTTCTTATGTTCTAGGAGACATCAATCAATTTCTTGCCG 98-149_RD-Red_RD-Green_1 ACCATAAAATCGTTCTTATGTTCTAGGAGACATCAATCAATTTCTTGCCG 26695_RD-Red_RD-Green_1 ACCATAAAATCGTTTTTAGCTTCTAGGAGACATCAGTCAGTTTCTTGCCA 26695_RD-Green_RD-Red_1 ACCATAAAATCGTTTTTAGCTTCTAGGAGACATCAGTCAGTTTCTTGCCA 26695_RD-Red_RD-Red_2 ACCATAAAATCGTTTTTAGCTTCTAGGAGACATCAGTCAGTTTCTTGCCA J254_RD-Green_RD-Red_2 ACCATAAAATCGTTCTTACATTCTAGGAGAC---AATCAATTTCTTGCCA J166_RD-Red_RD-Green_1 -------------------------------------------------- 98-170_RD-Red_RD-Green_1 TAGAAAAATCGCTTATTAGCTTGCTCCCTTTAAAAGGGTGTGAGTTTAAG 98-149_RD-Red_RD-Green_1 TAGAAAAATCGCTTATTAGCTTGCTCCCTTTAAAAGGGTGTGAGTTTAAG 26695_RD-Red_RD-Green_1 TAGAAAAATCGCTTATTAGCTTGCTCCCTTTAAAAGGGTGTGAGTTTAAG 26695_RD-Green_RD-Red_1 TAGAAAAATCGCTTATTAGCTTGCTCCCTTTAAAAGGGTGTGAGTTTAAG 26695_RD-Red_RD-Red_2 TAGAAAAATCGCTTATTAGCTTGCTCCCTTTAAAAGGGTGTGAGTTTAAG J254_RD-Green_RD-Red_2 TAGAAAAATCGCTTATTAGCTTGCTCCATTTAAAAGGGTGTGAATTTGGG J166_RD-Red_RD-Green_1 ---------------------------------------TAGAAAAATCT 98-170_RD-Red_RD-Green_1 GTATAAGGAAAACTTGTATCAAGTTTTGTTGGAATGGATTAGAAAAATCT 98-149_RD-Red_RD-Green_1 GTATAAGGAAAACTTGTATCAAGTTTTGTTGGAATGGATTAGAAAAATCT 26695_RD-Red_RD-Green_1 GTATAAGGAAAACTTGTATCAAGTTTTATTGGAATGGATTAGAAAAATCT 26695_RD-Green_RD-Red_1 GTATAAGGAAAACTTGTATCAAGTTTTATTGGAATGGATTAGAAAAATCT 26695_RD-Red_RD-Red_2 GTATAAGGAAA-CTTGTATCAAGTTTTATTGGAATGGATTAGAAAAATCT J254_RD-Green_RD-Red_2 TATCAAGGGAAACTTGTATCAAGTTTTGTTGGAATGGATTAGAAAAATCT *********** J166_RD-Red_RD-Green_1 GATTGGATTGACCCTTACAATTTTTCAAACCAATCGTTTAATAGCGATTA 98-170_RD-Red_RD-Green_1 GATTGGATTGACCCTTACAATTTTTCAAACCAATCGTTTAATAGCGATTA 98-149_RD-Red_RD-Green_1 GATTGGATTGACCCTTACAATTTTTCAAACCAATCGTTTAATAGCGATTA 26695_RD-Red_RD-Green_1 GATTGGATTGACCCTTACAATTTTTCAAACCAATCGTTTAATAGCGATTA 26695_RD-Green_RD-Red_1 GATTGGATTGACCCTTACAATTTTTCAAACCAATCGTTTAATAGCGATTA 26695_RD-Red_RD-Red_2 GATTGGATTGACCCTTACAATTTTTCAAACCAATCGTTTAATAGCGATTA J254_RD-Green_RD-Red_2 GATTGGATTGACCCTCACAACTTTTCAAACCAATCGTTTAATAGCGATTA *************** **** ***************************** J166_RD-Red_RD-Green_1 AATATGGCTATATATACTACAATAATAAGATTTTGATGGGTAAGATTGTT 98-170_RD-Red_RD-Green_1 AATATGGCTATATATACTACAATAATAAGATTTTGATGGGTAAGATTGTT 98-149_RD-Red_RD-Green_1 AATATGGCTATATATACTACAATAATAAGATTTTGATGGGTAAGATTGTT 26695_RD-Red_RD-Green_1 AATATGGCTATATATACTACAATAATAAGATTTTGAAAAGTGAGATTGTT 26695_RD-Green_RD-Red_1 AATATGRCTATATACACTACAACAATAAGATTTTGAAAGGTTGGTA---- 26695_RD-Red_RD-Red_2 AATATGACTATATACACTACAACAATAAGATTTTGAAAGGTTGGTA---- J254_RD-Green_RD-Red_2 AATATGGCTATGTATACTACAATAATAAGATTTTGAAAGGTTGGTA---- ****** **** ** ******* ************* ** * J166_RD-Red_RD-Green_1 TTTTGAAAGGATTTAA 98-170_RD-Red_RD-Green_1 TTTTGAAAGGATTTAA 98-149_RD-Red_RD-Green_1 TTTTGAAAGGATTTAA 26695_RD-Red_RD-Green_1 TTTTGAAAGGATTTAA 26695_RD-Green_RD-Red_1 ---------------- 26695_RD-Red_RD-Red_2 ---------------- J254_RD-Green_RD-Red_2 ----------------