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/home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/inter_igrs.meg
#Mega Title: inter_igrs.aln #J166_Inter-RD_RD-Red_RD-Green_ -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ---------------------------------------TAGAAAAATCT GATTGGATTGACCCTTACAATTTTTCAAACCAATCGTTTAATAGCGATTA AATATGGCTATATATACTACAATAATAAGATTTTGATGGGTAAGATTGTT TTTTGAAAGGATTTAA #98-170_Inter-RD_RD-Red_RD-Gree -------------------------------------------------- --------------------------------------GCATAAGAAAAC ACCATAAAATCGTTCTTATGTTCTAGGAGACATCAATCAATTTCTTGCCG TAGAAAAATCGCTTATTAGCTTGCTCCCTTTAAAAGGGTGTGAGTTTAAG GTATAAGGAAAACTTGTATCAAGTTTTGTTGGAATGGATTAGAAAAATCT GATTGGATTGACCCTTACAATTTTTCAAACCAATCGTTTAATAGCGATTA AATATGGCTATATATACTACAATAATAAGATTTTGATGGGTAAGATTGTT TTTTGAAAGGATTTAA #98-149_Inter-RD_RD-Red_RD-Gree -------------------------------------------------- --------------------------------------GCATAAGAAAAC ACCATAAAATCGTTCTTATGTTCTAGGAGACATCAATCAATTTCTTGCCG TAGAAAAATCGCTTATTAGCTTGCTCCCTTTAAAAGGGTGTGAGTTTAAG GTATAAGGAAAACTTGTATCAAGTTTTGTTGGAATGGATTAGAAAAATCT GATTGGATTGACCCTTACAATTTTTCAAACCAATCGTTTAATAGCGATTA AATATGGCTATATATACTACAATAATAAGATTTTGATGGGTAAGATTGTT TTTTGAAAGGATTTAA #26695_Inter-RD_RD-Red_RD-Green -------------------------------------------------- --------------------------------GCATAAGAAAATAAGAAC ACCATAAAATCGTTTTTAGCTTCTAGGAGACATCAGTCAGTTTCTTGCCA TAGAAAAATCGCTTATTAGCTTGCTCCCTTTAAAAGGGTGTGAGTTTAAG GTATAAGGAAAACTTGTATCAAGTTTTATTGGAATGGATTAGAAAAATCT GATTGGATTGACCCTTACAATTTTTCAAACCAATCGTTTAATAGCGATTA AATATGGCTATATATACTACAATAATAAGATTTTGAAAAGTGAGATTGTT TTTTGAAAGGATTTAA #26695_Inter-RD_RD-Green_RD-Red -------------------------------------------------- -------------------------------GGCATAAGAAAATAAGAAC ACCATAAAATCGTTTTTAGCTTCTAGGAGACATCAGTCAGTTTCTTGCCA TAGAAAAATCGCTTATTAGCTTGCTCCCTTTAAAAGGGTGTGAGTTTAAG GTATAAGGAAAACTTGTATCAAGTTTTATTGGAATGGATTAGAAAAATCT GATTGGATTGACCCTTACAATTTTTCAAACCAATCGTTTAATAGCGATTA AATATGRCTATATACACTACAACAATAAGATTTTGAAAGGTTGGTA---- ---------------- #26695_Inter-RD_RD-Red_RD-Red_2 TGTTAATAAAGAAATAGAAGCAGTTGCTAATACTGAAAAGAAAGCAGAAA AAGCGGGTTATGGTTATAGTAAAAGGATGTAGGCATAAGAAAATAAGAAC ACCATAAAATCGTTTTTAGCTTCTAGGAGACATCAGTCAGTTTCTTGCCA TAGAAAAATCGCTTATTAGCTTGCTCCCTTTAAAAGGGTGTGAGTTTAAG GTATAAGGAAA-CTTGTATCAAGTTTTATTGGAATGGATTAGAAAAATCT GATTGGATTGACCCTTACAATTTTTCAAACCAATCGTTTAATAGCGATTA AATATGACTATATACACTACAACAATAAGATTTTGAAAGGTTGGTA---- ---------------- #J254_Inter-RD_RD-Green_RD-Red_ -------------------------------------------------- --------------------------------GCATAAGAAAA------C ACCATAAAATCGTTCTTACATTCTAGGAGAC---AATCAATTTCTTGCCA TAGAAAAATCGCTTATTAGCTTGCTCCATTTAAAAGGGTGTGAATTTGGG TATCAAGGGAAACTTGTATCAAGTTTTGTTGGAATGGATTAGAAAAATCT GATTGGATTGACCCTCACAACTTTTCAAACCAATCGTTTAATAGCGATTA AATATGGCTATGTATACTACAATAATAAGATTTTGAAAGGTTGGTA---- ----------------