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/home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/#.aln#
CLUSTAL W (1.83) multiple sequence alignment J178_Red_1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACGCAGAGACAGCTAAC J282_Red_1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACGCAGAGACAGCTAAC J170_Red_1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACGCAGAGACAGCTGAC J258_Red_1_SN ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACACAGAGACAGCTAAC J282_Red_2_EQ ATGGAATCAGTAAAAACAGGAAAAGCAAATAAAGTTGGCAAAAACACAGAGACAGCTAAC J178_Red_2_EQ ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACGCAGAGACAGCTAAC J238_Red_1_NK ATGGAATCAGTAAAAACAGAAAAAACAAATAAAGTTGGCAAAAACACAGAGACAGCTGAC 26695_Red_1_SN ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAATACAGAGATGGCTAAT 26695_Red_2_SN ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAATACAGAGATGGCTAAT 26695_Red_1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAATACAGAGATGGCTAAT J99_Red_1_NK ATGGAATCAGTAAAAACAGTAAAAACAAATAAAGTTGGCAAAAACACAGAGACAGCTAAC J254_Red_1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACACAGAGACAGCTAAC J166_Red_2_KD ------------------------------------------------------------ J254_Red_2_EQ ------------------------------------------------------------ M-00-14_Red_2_KD ------------------------------------------------------------ J166_Red_1_KD ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 26695_Red_2_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACGCAGAGACAS-TAAC M-00-12_Red_1_NK ------------------------------------------------------------ M-00-14_Red_2_NK ------------------------------------------------------------ M-00-14_Red_1_NK ------------------------------------------------------------ M-HP1_Red_1_NK ------------------------------------------------------------ M-00-12_Red_2_NK ------------------------------------------------------------ J178_Red_1_NK ACAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAGCGCCATTACAAATATAATCAGA J282_Red_1_NK ACAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAGCACCATTACAAATATAATCAGA J170_Red_1_NK ACAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAGCGCCATTACAAATATAATCAGA J258_Red_1_SN ACAAAGGCAAATAAAGAGGCTCATTTTAAACAAGCGAGCGCCATTACAAATACGCTCAGA J282_Red_2_EQ ACAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA J178_Red_2_EQ ACAAAGGCAAATAAAGAGGCTCATTTTAAACAAGCGAGCGCCATTACAAATACGCTCAGA J238_Red_1_NK ACAAAGGCAAATAAAGAGGCTCATTTAAAACAAGCGAGTGCCATTACAAATACGCTCAGA 26695_Red_1_SN ACAAAGGCAAATAAAGAGRCTCATTTTAAACAAGYGAGCACCATTACAAATATAATCAGA 26695_Red_2_SN ACAAAGGCAAATAAAGAGGCTCATTTTAAACAAGCGAGCACCATTACAAATATAATCAGA 26695_Red_1_NK ACAAAGGCAAATAAAGAGACTCATTTTAAACAAGTGAGCGCCATTACAAATATAATCAGA J99_Red_1_NK ACAGAGGCAAGTAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATACGCTCCGA J254_Red_1_NK GCAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAATGCCATTACAAATATAATCAGA J166_Red_2_KD ------------------------------------------------------------ J254_Red_2_EQ ------------------------------------------------------------ M-00-14_Red_2_KD ------------------------------------------------------------ J166_Red_1_KD GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 26695_Red_2_NK GCAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAATGCCATTACAAATATAATCAGA M-00-12_Red_1_NK ------------------------------------------------------------ M-00-14_Red_2_NK ------------------------------------------------------------ M-00-14_Red_1_NK ------------------------------------------------------------ M-HP1_Red_1_NK ------------------------------------------------------------ M-00-12_Red_2_NK ------------------------------------------------------------ J178_Red_1_NK TCAATTAGTGGGTTTTTTACAAAGATCGCAAAGAGAGTTAGAGAACTTGTAAAAAAACAC J282_Red_1_NK TCAATTGGTGGGTTTTTTACAAAAATTGCAAAGAAAGTTAGAGAACTTGTAAAAAAACAC J170_Red_1_NK TCAATTAGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC J258_Red_1_SN TCAATTGGTGGGTTTTTTACAAAGATCGCAAAGAGAGTTAGAGAACTTGTAAAAAGACAC J282_Red_2_EQ TCAATTGGTGGGTTTTTTACAAAGATCGCAAAGAGAGTTAGAGAACTTGTAAAAAGACAT J178_Red_2_EQ TCAATTGGTGGGTTTTTTACAAAGATCGCAAAGAGAGTTAGAGAACTTGTAAAAAAACAC J238_Red_1_NK TCAATTGGTGGGTTTTTTACAAAAATTGTAAAGAGAGTTAGAGAACTTGTAAAAAAACAC 26695_Red_1_SN TCARTTSGTGGGATTTTTACAAAAATTGCAAAGAAAGTTAGAGGACTTGTAAAAAAACAC 26695_Red_2_SN TCAATTCGTGGGATTTTTACAAAAATTGCAAAGAAAGTTAGAGGACTTGTAAAAAAACAC 26695_Red_1_NK TCAGTTGGTGGGTTTTTTACAAAAATTGCAAAGAGAGTTAGAGGACTTGTAAAAAAACAC J99_Red_1_NK TCAATTGGTGGGATTTTTACAAAAATTGCAAAGAAAGTTAGAGAACTTGTGAAAAAACAT J254_Red_1_NK TCAATTAGTGGGTTTTTTACAAAAATTGCAAAGAAAGTTAGAGAACTTGTAAAAAAACAT J166_Red_2_KD ------------------------------------------------------------ J254_Red_2_EQ ------------------------------------------------------------ M-00-14_Red_2_KD ------------------------------------------------------------ J166_Red_1_KD TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 26695_Red_2_NK TCAGTTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAT M-00-12_Red_1_NK ------------------------------------------------------------ M-00-14_Red_2_NK ------------------------------------------------------------ M-00-14_Red_1_NK ------------------------------------------------------------ M-HP1_Red_1_NK ------------------------------------------------------------ M-00-12_Red_2_NK ------------------------------------------------------------ J178_Red_1_NK CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCGAAA J282_Red_1_NK CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGCATGCAAGAGGGCAAAA J170_Red_1_NK CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGCATGCAGGAAAGCGAAA J258_Red_1_SN CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGTGTGCAGGAAAGCGAAA J282_Red_2_EQ CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGTGTGCAGGAAAGCGAAA J178_Red_2_EQ CCCAAGAAAAGCAGGGCGGCATTAGTAGTATTGACCCATGTTGCATGCAGGAAAGCGAAA J238_Red_1_NK CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGCATGCAAGAAAGCGAAA 26695_Red_1_SN CCCAAGAAAAGCAGTGCGGCATTAGTAGTATTGACCCATATTGCGTGCAAGAAAGCGAAA 26695_Red_2_SN CCCAAGAAAAGCAGTGCGGCATTAGTAGTATTGACCCATATTGCGTGCAAGAAAGCGAAA 26695_Red_1_NK CCCAAGAAAAGCAGTGCGGCATTAGTAGTATTGACCCATATTGCGTGCAAGAAAGCGAAA J99_Red_1_NK CCCAAGAAAAGCAGTGTGGCATTAGTAGTATTGACCCATATTGCGTGCAAGAGGGCAAAA J254_Red_1_NK CCCAAGAAAAGCAATGCGGCATTAGTAGTATTAACCCATGTTGCGTGCAAGAAAGCGAAA J166_Red_2_KD ------------------------------------------GCGGGCA-GAAAGCAAAG J254_Red_2_EQ -------------------------------------CCGGTGCGGGCA-GAAAGCGAAA M-00-14_Red_2_KD --------------------------------------------GGGCG-GCGAAGCAAA J166_Red_1_KD CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 26695_Red_2_NK CCCGAGAAAAGCAGTGTGGCATTAGTAGTATTAACCCATGCTGCATGCAAGAAAGCGAAA M-00-12_Red_1_NK ------------------------------------------------------------ M-00-14_Red_2_NK ---------------------------------------------------------CAC M-00-14_Red_1_NK -------------------------------------------CGTTGCGGCGAAGCAAA M-HP1_Red_1_NK ------------------------------------------------CGGCGAAGCAA- M-00-12_Red_2_NK --------------------------------------------GGGGCAGGAAGC-AAA J178_Red_1_NK GAATTGGACGATAAAGTCCAGG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- J282_Red_1_NK GAATTAGACGATAAAGTCCAGG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- J170_Red_1_NK GAATTAGACGATAAAGTCCAAG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- J258_Red_1_SN GAATTGGACGATAAAGTCCAGG-ATAAATCCAAACAAGCTGAAAAAGAAAATCGAATC-- J282_Red_2_EQ GAATTGGACGATAAAGTCCAGG-ATAAATCCAAACAAGCTGAAAAAGAAAATCGAATC-- J178_Red_2_EQ GAATTGGACGATAAAGTCCAAG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- J238_Red_1_NK GAATTGGACGATAAAGTCCAGG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- 26695_Red_1_SN GAATTAGACGATAAAGTCCAAG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- 26695_Red_2_SN GAATTAGACGATAAAGTCCAAG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- 26695_Red_1_NK GAATTAGACGATAAAGTCCAAG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- J99_Red_1_NK GAATTGGACGATAAAGTCCAAG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- J254_Red_1_NK GAATTAGACGATAAAGTCCAGG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- J166_Red_2_KD AATTGGGACGATAAAGTCCAGG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- J254_Red_2_EQ GAATTAGACGATAAAGTCCAGG-ATAAATCCAAACAAGCTGAAAAAGAAAATCATATC-- M-00-14_Red_2_KD GAATTGGACGATAAAGTCCAGG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- J166_Red_1_KD GAATTGGACGATAAAGTCCAGG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- 26695_Red_2_NK GAATTGGACGATAAAGTCCAGG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- M-00-12_Red_1_NK -AATTAGACGATAAAGTCCAGG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- M-00-14_Red_2_NK GAATTAGACGATAAAGTCCAGG-ATAAATCCAAACAAGCTGAAAAAGAAAATCCAATC-- M-00-14_Red_1_NK GAATTAGACGATAAAGTCCAGG-ATAAATCCAAACAAGCTGAAAAAGAAAATCCCTTT-- M-HP1_Red_1_NK GAATTAGACGATAAAGTCCAGG-ATAAATCCAAACAAGCTGAAAAAGAAAATCAAATC-- M-00-12_Red_2_NK GAATTAGACGATAAAGTCCAGGCATAAATCCAAACAAGCTGAAAAAGAAAACCCCNTTTA * * ************** * **************************** * * J178_Red_1_NK -AATTGGTGGAAATATTC---AGGATTAACAATAGTGGCAAGTTTATTATTAGCCGCTTG J282_Red_1_NK -AATTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTG J170_Red_1_NK -AATTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTG J258_Red_1_SN -AATTGGTGGAAGTATTC---AGGACTCACAATAGCGACAAGTTTATTATTAGCCGCTTG J282_Red_2_EQ -AATTGGTGGAAGTATTC---AGGACTCACAATAGCGACAAGTTTATTATTAGCCGCTTG J178_Red_2_EQ -AATTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTG J238_Red_1_NK -AATTGGTGGAAATATTCTTCAGGATTAACAATAGCGGCAAGTTTATTACTAGCCGCTTG 26695_Red_1_SN -AATTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTG 26695_Red_2_SN -AATTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTG 26695_Red_1_NK -AATTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTG J99_Red_1_NK -AATTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTG J254_Red_1_NK -AATTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTG J166_Red_2_KD -AATTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTG J254_Red_2_EQ -AATTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTG M-00-14_Red_2_KD -AATTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTG J166_Red_1_KD -AATTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTG 26695_Red_2_NK -AATTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTG M-00-12_Red_1_NK -AATTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTG M-00-14_Red_2_NK -AATTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTG M-00-14_Red_1_NK -AATTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTG M-HP1_Red_1_NK -AATTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTG M-00-12_Red_2_NK AGNTGGGTGGAAATATTC---AGGATTAACAATAGCGGCACCTTTATTATTAGCCGCTTG * ******* ***** **** * ******* * ** ******* ********** J178_Red_1_NK TAGCGTTGGTGATACTGATAAATAGATAGAGTTA J282_Red_1_NK TAGCGTTGGTGATACTGATAAACAGATAGAGTTA J170_Red_1_NK TAGCGTTGGTGATACTGATAAACAGATAGAGTTA J258_Red_1_SN TAGTGCTGGTGATATTGATAAACAGATAGAGTTA J282_Red_2_EQ TAGTGCTGGTGATATTGATAAACAGATAGAGTTA J178_Red_2_EQ TAGCGTTGGTGATATTGATAAACAAATAGAGTTA J238_Red_1_NK TAGCGCTGGTGATATTGATAAACAAATAGAGTTA 26695_Red_1_SN TAGCACTGGTGATGTTAGTGAACAAATAGAACTA 26695_Red_2_SN TAGCACTGGTGATGTTAGTGAACAAATAGAACTA 26695_Red_1_NK TAGCGCTGGTGATACTGATAAACAGATAGAACTA J99_Red_1_NK TAGCACTGGTGATATTGATAAACAAATAGAACTA J254_Red_1_NK TAGCGCTGGTGATATTGATAAACAAATAGAACTA J166_Red_2_KD TAGTGTTGGTGATATTGATAAACAAATAGAACTA J254_Red_2_EQ TAGTGTTGGTGATACTGATAAACAGATAGAGTTA M-00-14_Red_2_KD TAGTGTTGGTGATATTGATAAACAAATAGAACTA J166_Red_1_KD TAGTGTTGGTGATATTGATAAACAAATAGAACTA 26695_Red_2_NK TAGTGTTGGTGATATTGATAAACAGATAGAGTTA M-00-12_Red_1_NK TAGCGCTGGTGATACTGATAAACAAATAGAGTTA M-00-14_Red_2_NK TAGCGCTGGTGATACTGATAAACAAATAGAGTTA M-00-14_Red_1_NK TAGCGCTGGTGATACTGATAAACAAATAGAGTTA M-HP1_Red_1_NK TAGCGCTGGTGATACTGATAAACAAATAGAGTTA M-00-12_Red_2_NK TAGCGCTGGTGATACTGATAAACAAATAGAGTTA *** ******* * * ** * ***** **